dnamethylome.org

DNA Methylome Programming Database

MethBank a database of DNA methylome programming. MethBank is a DNA methylome programming database that integrates the genome-wide single-base nucleotide methylomes of gametes and early embryos at multiple diverse stages in different model organisms. MethBank features integration and visualization of high-resolution DNA methylomes as well as gene expression profiles and genetic polymorphisms. Number of methylated CG sites: view. Sperm: 20,606,757. Egg: 20,987,274. 16-cell: 18,948,935. 32-cell: 20,825,693.

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Beijing Institute of Genomics, Chinese Academy of Sciences (CAS)

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DNA Methylome Programming Database | dnamethylome.org Reviews

<META> DESCRIPTION

MethBank a database of DNA methylome programming. MethBank is a DNA methylome programming database that integrates the genome-wide single-base nucleotide methylomes of gametes and early embryos at multiple diverse stages in different model organisms. MethBank features integration and visualization of high-resolution DNA methylomes as well as gene expression profiles and genetic polymorphisms. Number of methylated CG sites: view. Sperm: 20,606,757. Egg: 20,987,274. 16-cell: 18,948,935. 32-cell: 20,825,693.

<META> KEYWORDS

1 version 1 0

2 methylome browser

3 zebrafish

4 mouse

5 downloads

6 learn more

7 danio rerio

8 view

9 mus musculus

10 global visitors

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DNA Methylome Programming Database | dnamethylome.org Reviews

https://dnamethylome.org

MethBank a database of DNA methylome programming. MethBank is a DNA methylome programming database that integrates the genome-wide single-base nucleotide methylomes of gametes and early embryos at multiple diverse stages in different model organisms. MethBank features integration and visualization of high-resolution DNA methylomes as well as gene expression profiles and genetic polymorphisms. Number of methylated CG sites: view. Sperm: 20,606,757. Egg: 20,987,274. 16-cell: 18,948,935. 32-cell: 20,825,693.

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dnamethylome.org

1

Download -- DNA Methylome Programming Database

http://www.dnamethylome.org/download

A Database of DNA Methylome Programming. Version 1.0(May 2014). A total of nine single-base resolution DNA methylomes were generated for Danio rerio, including gametes (sperm and egg), 16-cell,32-cell,64-cell,128-cell,1k-cell , Germring and testis.

2

FAQ -- DNA Methylome Programming Database

http://www.dnamethylome.org/faq

A Database of DNA Methylome Programming. Version 1.0(May 2014). How do I cite MethBank? Does MethBank provide a genome browser for visualization of methylation data? Can I download the data? How can I query a gene? Is it possible to get information about differentially methylated regions (DMRs) associated with a gene? Can I get DMR information of a region that I concern? Can I get the average methylation level of a region that I concern? Is it possible to get SNP information? 3 Data collection and methods.

3

About--DNA Methylome Programming Database

http://www.dnamethylome.org/about

A Database of DNA Methylome Programming. Version 1.0(May 2014). DNA methylation is one major epigenetic modification that is crucial for the development and differentiation of various cell types in an organism. MethBank is a database of DNA methylome programming, dedicating to storing, browsing and mining single-base nucleotide whole-genome methylation data of early embryos spanning different animals. At present, large cohorts of early embryo methylomes for. Are available in MethBank. Number of CpG Islan...

4

Mouse Methylome Browser- DNA Methylome Programming Database

http://www.dnamethylome.org/mouse_visualization

A Database of DNA Methylome Programming. Version 1.0(May 2014). Mouse - Methylome browser. See full screen view.

5

DNA Methylome Programming Database

http://www.dnamethylome.org/zebrafish_visualization

A Database of DNA Methylome Programming. Version 1.0(May 2014). Zebrafish - Methylome browser. See full screen view.

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alz.big.ac.cn

AlzBase

http://alz.big.ac.cn/alzBase/aboutus

Eb service for B. Parallel Alignment and back-. Eb service for B. We are interested in systems biology of Alzheimer’s disease. Our recent publications in this area are listed below. 10 G-C. Han, J.-Y.Sun, J.-J.Wang, Z.-X.Bai, F.-H.Songand H.-X.Lei*.(2014) Genomics in neurological disorders.Genomics Proteomics and Bioinformatics12: 156-163. 6 J-J Wang, X.-M.Feng, Z.-X.Bai, L.-W.Jin, Y. Duan and H.-X.Lei*.(2014) Chromosome 19p in Alzheimer’s disease: when genome meet...5 G-C Han, J.-J.Wang, F. ...4 J-Y Sun...

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AlzBase

http://alz.big.ac.cn/alzBase/correlationIdrch.Job

Eb service for B. Parallel Alignment and back-. Eb service for B. Entrez ID * required. One id per line. Chinese Academy of Sciences. No1 Beichen West Road, Chaoyang District, Beijing 100101, China.

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AlzBase

http://alz.big.ac.cn/alzBase/Document

Eb service for B. Parallel Alignment and back-. Eb service for B. Several layers of information have been integrated in AlzBase. Information regarding gene expressionincludes Alzheimer’s disease (AD), non-dementia, related diseases and aging. Information regarding correlation with disease severity includes cortical atrophy, Braak stage, MMSE and NFT scores. Other annotation information comes from Allen brain atlas, GWAS catalogue, eQTL studies and CTD drug database.Inaddition, gene-gene c...Publically av...

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基因组勘测序列 Genome Survey Sequences，GSS 是基因组DNA克隆的一次性部分测序得到的序列。序列标签位点 Sequence Tagged Sites 是基因组序列标记位点，其主要来源有随机位点序列、表达基因序列、遗产标记序列等。随着测序技术的发展，新的测序仪器开始投入使用，其产生的数据也和以往不同，测出的单条序列较短，为此我们将其称为小片段序列集 Short Read Archive。 Http:/ lifecenter.sgst.cn/gb2/. Virtual Chinese Genome Database is a dynamic genome database of Chinese population.VCGDB is a big data solution based on public data released by 1000 Genomes Project. Http:/ lifecenter.sgst.cn/ipride/. Http:/ lifecenter.sgst.cn/para/. Query interface for microRNA - g...

alz.big.ac.cn

AlzBase

http://alz.big.ac.cn/alzBase/home

Eb service for B. Parallel Alignment and back-. Eb service for B. Provides four types of information regarding genes involved in Alzheimer’s disease (AD). 1) Gene dys-regulation in AD, aging and related diseases. 2) Multi-level annotations including correlation to AD severity. 3) Gene networks including brain co-expression network. 4) A summary of top genes in Alzbase and those from genetic studies of AD. Visitor since April 30, 2014 ; Last update: August 30, 2014. Chinese Academy of Sciences.

cbb.big.ac.cn

Lab News - The Zhang Lab

http://cbb.big.ac.cn/Lab_News

From The Zhang Lab. International workshop on statistical machine learning and biosciences on July 18-19, 2013. Dr Zhang Zhang joined the Editorial Board of PLoS ONE. As Academic Editor [2012-09-22]. Welcome Hao Wu, Gang Wu, Dawei Huang and Siqi Liu to join the Lab [2012-08-14]. Three posters presented in the 5th Chinese Conference on Bioinformatics and Systems Biology, Harbin, China [2012-08-08]. Summer internships available for undergraduates/graduate students. At CAS official website [2012-03-31].

cbb.big.ac.cn

Web Systems - The Zhang Lab

http://cbb.big.ac.cn/Web_Systems

From The Zhang Lab. MethBank: DNA Methylome Programming Database. ESND (English-to-Chinese Scientific Nomenclature Dictionary). IBio (= my biology my biography). FFGED (Filamentous Fungal Gene Expression Database). TreeFam (Tree Families Database). Web Services and Servers. Cloud CAT (Cloud-based Composition Analysis Toolkit). FGF (Fishing Gene Family). Description: Information Commons for Rice. Availability: http:/ ic4r.org. Description: a catalogue of biological databases. Description: A database for m...

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DNA Methylome Programming Database

MethBank a database of DNA methylome programming. MethBank is a DNA methylome programming database that integrates the genome-wide single-base nucleotide methylomes of gametes and early embryos at multiple diverse stages in different model organisms. MethBank features integration and visualization of high-resolution DNA methylomes as well as gene expression profiles and genetic polymorphisms. Number of methylated CG sites: view. Sperm: 20,606,757. Egg: 20,987,274. 16-cell: 18,948,935. 32-cell: 20,825,693.

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