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Science and A Life of Adventure

Science and A Life of Adventure. Thursday, October 23, 2008. Notes from 10/21/2008 Patient Matching Call. A) We're experiencing out of memory errors in Tomcat with 100,000 patients in OpenMRS and 512 MB allocated to Tomcat. The first blocking run (blocking on postal code) appears to be completing; the out of memory error appears to occur during the analysis phase (either during random sampling or during Expectation Maximization) of the second blocking run (blocking on SSN). C) Currently we have been unab...

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Science and A Life of Adventure. Thursday, October 23, 2008. Notes from 10/21/2008 Patient Matching Call. A) We're experiencing out of memory errors in Tomcat with 100,000 patients in OpenMRS and 512 MB allocated to Tomcat. The first blocking run (blocking on postal code) appears to be completing; the out of memory error appears to occur during the analysis phase (either during random sampling or during Expectation Maximization) of the second blocking run (blocking on SSN). C) Currently we have been unab...
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Science and A Life of Adventure | doctorshaun.blogspot.com Reviews

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Science and A Life of Adventure. Thursday, October 23, 2008. Notes from 10/21/2008 Patient Matching Call. A) We're experiencing out of memory errors in Tomcat with 100,000 patients in OpenMRS and 512 MB allocated to Tomcat. The first blocking run (blocking on postal code) appears to be completing; the out of memory error appears to occur during the analysis phase (either during random sampling or during Expectation Maximization) of the second blocking run (blocking on SSN). C) Currently we have been unab...

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1

Science and A Life of Adventure: July 2008

http://www.doctorshaun.blogspot.com/2008_07_01_archive.html

Science and A Life of Adventure. Tuesday, July 29, 2008. Notes from 7/29/08 Patient Matching call. 1 As a first pass, James will use an SQL. Query approach to create a data source reader ( DSR. Patient data from the Patient, Name, Address, and Attribute tables. To accomplish this we will need to map java object properties to SQL. Database field names. We will eventually evaluate using HQL. After demonstrating functionality using SQL. Will load "test5" synthetic data into OpenMRS. Identifies the groups of...

2

Science and A Life of Adventure: September 2008

http://www.doctorshaun.blogspot.com/2008_09_01_archive.html

Science and A Life of Adventure. Tuesday, September 23, 2008. Notes from 9/23/2008 Patient Matching Call. We modified our tactics for matching because the matching process was taking longer to complete than we hoped. We believe the performance issues relate to the myriad Hibernate queries that are required to create blocks of potential pairs. For example, if the patient table contains 4,500 unique SSN's, then 4,500 different Hibernate queries must be called to create potential pairs where SSN's match.

3

Science and A Life of Adventure: June 2008

http://www.doctorshaun.blogspot.com/2008_06_01_archive.html

Science and A Life of Adventure. Monday, June 16, 2008. OpenMRS Patient Matching Module. This is the initial post describing the collective efforts toward implementing an open-source patient identity management framework in. As you may know, health care information is increasingly distributed. Why is a patient matching module needed for OpenMRS? As mentioned above, health care data is scattered across dispar. On is known to contain more than 700,000 patients(! In a related fashion, it's also the case tha...

4

Science and A Life of Adventure: August 2008

http://www.doctorshaun.blogspot.com/2008_08_01_archive.html

Science and A Life of Adventure. Tuesday, August 5, 2008. Notes from 8/5/08 Patient Matching Call. 1 The HQL-based data source reader (DSR) nearly complete. James needs to add patient id (= person id? To the matching objects. About 1 day is needed to complete the DSR. James will move DSR to link VM for testing/implementation. He will test the DSR's ability to use multiple blocking columns and multiple data types as blocking columns. 6 Transitive grouping function will be tested as part of the end-to-end ...

5

Science and A Life of Adventure: Notes from 7/15/08 Patient Matching call

http://www.doctorshaun.blogspot.com/2008/07/notes-from-71508-patient-matching-call.html

Science and A Life of Adventure. Tuesday, July 22, 2008. Notes from 7/15/08 Patient Matching call. 1 Re-instantiate VM (Shaun/James). 2 Reload OpenMRS on the VM (Nyoman). 3 Generate synthetic data (Shaun). 4 Load synthetic data into OpenMRS (James/Nyoman). 5 James to evaluate (speed/efficiency) using an HQL query approach to accessing patient data in OpenMRS. 6 James/Nyoman to integrate UID/de-duplicate workflow; build uid rules into FormPairs. 7 Shaun to test ticket 897 changes. View my complete profile.

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Science and A Life of Adventure

Science and A Life of Adventure. Thursday, October 23, 2008. Notes from 10/21/2008 Patient Matching Call. A) We're experiencing out of memory errors in Tomcat with 100,000 patients in OpenMRS and 512 MB allocated to Tomcat. The first blocking run (blocking on postal code) appears to be completing; the out of memory error appears to occur during the analysis phase (either during random sampling or during Expectation Maximization) of the second blocking run (blocking on SSN). C) Currently we have been unab...

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