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Papilio glaucus - LepBase - Lepidoptera genome browser

http://ensembl.lepbase.org/Papilio_glaucus_v1x1/Info/Index

Papilio glaucus (v1.1). Papilio glaucus v1.1. Data Source Grishin Lab UT Southwestern Medical Center. From Wikipedia) The Eastern tiger swallowtail (Papilio glaucus) is a species of swallowtail butterfly native to eastern North America. It is one of the most familiar butterflies in the eastern United States, where it is common in many different habitats. Picture credit: Wikimedia commons. Search for genes and regions of interest using BLAST. Example search terms: pgl2313.5.

ensembl.lepbase.org

Chilo suppressalis - LepBase - Lepidoptera genome browser

http://ensembl.lepbase.org/Chilo_suppressalis_csuogs1/Info/Index

Chilo suppressalis (CsuOGS1.0). Chilo suppressalis CsuOGS1.0. Data Source Department of Entomology, College of Plant Protection, Nanjing Agricultural University. The rice striped stem borer, Chilo suppressalis, is a major pest of rice crops in most rice producing countries. The data presented here have been made available by ChiloDB[1], a genomic and transcriptomic database for Chilo suppressalis. Search for genes and regions of interest using BLAST. Example search terms: CSUOGS100006-TA.

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Finding help | lepbase.org

http://lepbase.org/finding-help

Added by Richard Challis on July 22nd 2016. We’re adding some tutorials to make Lepbase easier to use. If you don’t see what you are looking for below then please get in touch. To suggest a topic for us to add or check out the official Ensembl.

lepbase.org

blog | lepbase.org

http://lepbase.org/category/blog?tag=blast

Added by Richard Challis on February 13th 2016. Lepbase release 2 went live on 13th February 2016 with 21 annotated assemblies across 17 species. This release adds six additional species:. Papilio machaon Pap ma 1.0. Papilio xuthus Pap xu 1.0. And Pxut 1.0. Plus updated assemblies/annotations for three of the species in release 1:. Bicyclus anynana v1.2. All of these species (together with unannotated Heliconiine DISCOVAR assemblies) are available on our ensembl. Is powered by SequenceServer. Blastable d...

ensembl.lepbase.org

Danaus plexippus - LepBase - Lepidoptera genome browser

http://ensembl.lepbase.org/Danaus_plexippus_v3/Info/Index

Data Source Reppert Lab. Picture credit (Creative Commons BY 2.0): Thomas Bresson 2010. Search for genes and regions of interest using BLAST. Or use the box in the the top right to search for genes, scaffolds and annotations. Example search terms: DPOGS200009. Alternate assembly available: Danaus plexippus DanPle 1.0. Assembly stats plots are described at github.com/rjchallis/assembly-stats. The genome assembly was obtained from MonarchBase. OGS20 gene models were imported from MonarchBase.

ensembl.lepbase.org

Limnephilus lunatus - LepBase - Lepidoptera genome browser

http://ensembl.lepbase.org/Limnephilus_lunatus_v1/Info/Index

From Caddisfly genome project. Picture credit: Wikimedia commons. Search for genes and regions of interest using BLAST. Or use the box in the the top right to search for genes, scaffolds and annotations. Example search terms: LLUN010179. Assembly stats plots are described at github.com/rjchallis/assembly-stats. Downloaded from Caddisfly genome project. Downloaded from Caddisfly genome project. BCM-HGSC conditions of use. Any redistribution of the data should carry this notice. Codon usage plots are descr...

lepbase.org

download | lepbase.org

http://lepbase.org/category/download

All major datasets used in the tools and analyses presented on this site are available for download. Download Progressive Cactus whole genome alignments.

lepbase.org

Lepbase release 3 | lepbase.org

http://lepbase.org/lepbase-release-3

Added by Sujai Kumar on August 12th 2016. We are pleased to announce the third release of our Lepidopteran genome browser including new datasets, updated analyses, a new look, and some code changes that will help us to add new data between major releases in the future. We’ve added assemblies for 4 species, bringing our tally up to 43 assemblies in 36 species, all available on our Ensembl genome browser ( ensembl.lepbase.org. BLAST interface ( blast.lepbase.org. The red postman butterfly. Showing all orth...

lepbase.org

tools | lepbase.org

http://lepbase.org/category/tools

Lepbase offers a collection of tools for visualisation and analysis of Lepidopteran genome data which are updated with each release. An archive of the previous release (v1) will be maintained until the next release.