eckertcompcode.blogspot.com

(Un)Useful Computer Code

Computer code from the Eckert lab. Friday, October 28, 2011. Species tree - gene tree discordance for the Balfourianae. The purpose of this script is to perform a two stage bootstrap of loci and sites within loci for a set of 191 nuclear genes being used to infer the species tree for Pinus. The R script is here: bootstrap. And (3) pairwise inference. Author: Andrew J. Eckert. Thursday, October 27, 2011. DnaSAM - DNA Sequence Analysis and Manipulation. DnaSAM is a Perl program that assists in high-through...

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Computer code from the Eckert lab. Friday, October 28, 2011. Species tree - gene tree discordance for the Balfourianae. The purpose of this script is to perform a two stage bootstrap of loci and sites within loci for a set of 191 nuclear genes being used to infer the species tree for Pinus. The R script is here: bootstrap. And (3) pairwise inference. Author: Andrew J. Eckert. Thursday, October 27, 2011. DnaSAM - DNA Sequence Analysis and Manipulation. DnaSAM is a Perl program that assists in high-through...

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(Un)Useful Computer Code | eckertcompcode.blogspot.com Reviews

https://eckertcompcode.blogspot.com

Computer code from the Eckert lab. Friday, October 28, 2011. Species tree - gene tree discordance for the Balfourianae. The purpose of this script is to perform a two stage bootstrap of loci and sites within loci for a set of 191 nuclear genes being used to infer the species tree for Pinus. The R script is here: bootstrap. And (3) pairwise inference. Author: Andrew J. Eckert. Thursday, October 27, 2011. DnaSAM - DNA Sequence Analysis and Manipulation. DnaSAM is a Perl program that assists in high-through...

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eckertcompcode.blogspot.com

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(Un)Useful Computer Code: DnaSAM - DNA Sequence Analysis and Manipulation

http://www.eckertcompcode.blogspot.com/2011/10/dnasam.html

Computer code from the Eckert lab. Thursday, October 27, 2011. DnaSAM - DNA Sequence Analysis and Manipulation. DnaSAM is a Perl program that assists in high-throughout estimation of diversity and divergence from DNA sequence alignments. It was written by John Liechty (Department of Plant Sciences, University of California at Davis) with population genetic input from A. J. Eckert. It is available here. And if you use DnaSAM please cite the following publication:. Subscribe to: Post Comments (Atom).

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(Un)Useful Computer Code: Species tree - gene tree discordance for the Balfourianae

http://www.eckertcompcode.blogspot.com/2011/10/species-tree-gene-tree-discordance-for.html

Computer code from the Eckert lab. Friday, October 28, 2011. Species tree - gene tree discordance for the Balfourianae. The purpose of this script is to perform a two stage bootstrap of loci and sites within loci for a set of 191 nuclear genes being used to infer the species tree for Pinus. The R script is here: bootstrap. And (3) pairwise inference. Author: Andrew J. Eckert. Subscribe to: Post Comments (Atom). Picture Window template. Template images by wingmar.

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eckertdata.blogspot.com

Published Data: Eckert et al.: Metabolomics in loblolly pine, New Phytologist

http://eckertdata.blogspot.com/2011/10/eckert-et-al-metabolomics-in-loblolly.html

Data from the Eckert lab. Data Set Release Disclaimer. The following lists links to a variety of data sets used in publications coming out of the Eckert lab. When possible they are grouped by publication. Feel free to use the data as needed. We only ask that you acknowledge the source of the data - either the original publication or this site. Sunday, October 30, 2011. Metabolomics in loblolly pine, New Phytologist. Subscribe to: Post Comments (Atom).

eckertdata.blogspot.com

Published Data: BAC annotations for loblolly pine (Pinus taeda L.)

http://eckertdata.blogspot.com/2013/02/bac-annotations-for-loblolly-pine-pinus.html

Data from the Eckert lab. Data Set Release Disclaimer. The following lists links to a variety of data sets used in publications coming out of the Eckert lab. When possible they are grouped by publication. Feel free to use the data as needed. We only ask that you acknowledge the source of the data - either the original publication or this site. Saturday, February 16, 2013. BAC annotations for loblolly pine ( Pinus taeda. Eckert and Dyer (2012). Eckert, A. J. 21: 2836-2838. (commentary).

eckertdata.blogspot.com

Published Data: Eckert et al.: Distribution of deleterious fitness effects in soft pines

http://eckertdata.blogspot.com/2011/10/eckert-et-al-distribution-of.html

Data from the Eckert lab. Data Set Release Disclaimer. The following lists links to a variety of data sets used in publications coming out of the Eckert lab. When possible they are grouped by publication. Feel free to use the data as needed. We only ask that you acknowledge the source of the data - either the original publication or this site. Sunday, October 30, 2011. Distribution of deleterious fitness effects in soft pines. Eckert, A. J. DeGiorgio, M., J. Syring, A. J. Eckert.

eckertlab.blogspot.com

Eckert Lab: Spring 2013 Update (02/16/2013)

http://eckertlab.blogspot.com/2013/02/spring-2013-update-11122012.html

Plant evolutionary genomics at Virginia Commonwealth University. Quote of the Month. If a man has learnt to know a thing in itself, and in its relation to surrounding phenomena, he has got from a University what it is its proper duty to teach." - Thomas Carlyle (1866). Welcome to the Eckert Lab located in the Department of Biology. At Virginia Commonwealth University. Current focal points of research are:. Genetic Architecture of Adaptation. How do woody plants adapt to their environments? Below you will...

eckertdata.blogspot.com

Published Data: Local adaptation for Bolander pine (Pinus contorta subsp. bolanderi)

http://eckertdata.blogspot.com/2013/02/local-adaptation-for-bolander-pine.html

Data from the Eckert lab. Data Set Release Disclaimer. The following lists links to a variety of data sets used in publications coming out of the Eckert lab. When possible they are grouped by publication. Feel free to use the data as needed. We only ask that you acknowledge the source of the data - either the original publication or this site. Saturday, February 16, 2013. Local adaptation for Bolander pine ( Pinus contorta. Data for the following publication can be obtained here:. Eckert, A. J.

eckertdata.blogspot.com

Published Data: Landscape genomic data for loblolly pine (Pinus taeda L.)

http://eckertdata.blogspot.com/2012/01/landscape-genomic-data-for-loblolly.html

Data from the Eckert lab. Data Set Release Disclaimer. The following lists links to a variety of data sets used in publications coming out of the Eckert lab. When possible they are grouped by publication. Feel free to use the data as needed. We only ask that you acknowledge the source of the data - either the original publication or this site. Friday, January 27, 2012. Landscape genomic data for loblolly pine ( Pinus taeda. During my tenure in the. From the 2010 Genetics. 1) Eckert, A. J. Picture Window ...

eckertinterest3.blogspot.com

Phylogeography and Adaptation: Literature Cited

http://eckertinterest3.blogspot.com/2014/03/literature-cited.html

A research interest of the Eckert lab. Quote of the Month. Even apparently similar adaptations may be built from genetically different components.". Eckert, A. J. 2011 Seeing the forest for the trees: statistical phylogeography in a changing world. New Phytologist. Eckert, A. J. And B D. Hall. 2006. Phylogeny, historical biogeography, and patterns of diversification for Pinus. Pinaceae) – Phylogenetic tests of fossil-based hypotheses. Molecular Phylogenetics and Evolution. Eckert, A. J. Eckert, A. J.

eckertcladist.blogspot.com

Confessions of a Closet Cladist: Quote of the Month

http://eckertcladist.blogspot.com/2012/10/quote-of-month.html

Confessions of a Closet Cladist. Random musings on the nature of species, populations and the ways we study them. Quote of the Month. Parsimony has killed more people than you'll ever know.". Quote from: "Thomas Wolfe - A Biography" by Elizabeth Nowell (pgs. 428-429). Author (and closet cladist). Is this background what cladist heaven looks like? So many groups, so little time. Picture Window template. Template images by fpm.

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Confessions of a Closet Cladist

Confessions of a Closet Cladist. Random musings on the nature of species, populations and the ways we study them. Quote of the Month. Parsimony has killed more people than you'll ever know.". Quote from: "Thomas Wolfe - A Biography" by Elizabeth Nowell (pgs. 428-429). Inaugural Post - Why do we need groups in biology? What is meant exactly when we refer to a lineage? Is this nothing more than a convenient heuristic or is it something real that can be defined explicitly? Subscribe to: Posts (Atom).

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eckertcompcode.blogspot.com

(Un)Useful Computer Code

Computer code from the Eckert lab. Friday, October 28, 2011. Species tree - gene tree discordance for the Balfourianae. The purpose of this script is to perform a two stage bootstrap of loci and sites within loci for a set of 191 nuclear genes being used to infer the species tree for Pinus. The R script is here: bootstrap. And (3) pairwise inference. Author: Andrew J. Eckert. Thursday, October 27, 2011. DnaSAM - DNA Sequence Analysis and Manipulation. DnaSAM is a Perl program that assists in high-through...

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