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E. Coli Metabolome Database

About the E. Coli Metabolome Database. You are using an unsupported browser. Please upgrade your browser to a newer version to get the best experience on E. Coli Metabolome Database. ECMDB Version 1.0. The E Coli Metabolome Database (ECMDB) is a manually curated database of small molecule metabolites found in or produced by Escherichia coli (strain K12, MG1655). This database covers metabolites described in textbooks, scientific journals, metabolic reconstructions and other electronic databases. ECMD...

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E. Coli Metabolome Database | ecmdb.ca Reviews
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About the E. Coli Metabolome Database. You are using an unsupported browser. Please upgrade your browser to a newer version to get the best experience on E. Coli Metabolome Database. ECMDB Version 1.0. The E Coli Metabolome Database (ECMDB) is a manually curated database of small molecule metabolites found in or produced by Escherichia coli (strain K12, MG1655). This database covers metabolites described in textbooks, scientific journals, metabolic reconstructions and other electronic databases. ECMD...
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E. Coli Metabolome Database | ecmdb.ca Reviews

https://ecmdb.ca

About the E. Coli Metabolome Database. You are using an unsupported browser. Please upgrade your browser to a newer version to get the best experience on E. Coli Metabolome Database. ECMDB Version 1.0. The E Coli Metabolome Database (ECMDB) is a manually curated database of small molecule metabolites found in or produced by Escherichia coli (strain K12, MG1655). This database covers metabolites described in textbooks, scientific journals, metabolic reconstructions and other electronic databases. ECMD...

INTERNAL PAGES

ecmdb.ca ecmdb.ca
1

ECMDB: Advanced Search

http://www.ecmdb.ca/unearth/advanced/compounds

E Coli Numbers and Stats. Provides a powerful interface for searching the database. You can build up queries that support a wide range of conditions and predicates. To get started, click the "Add Search Condition" button to select your first field. If you add a condition but don't enter anything into the search for that condition,. No search will be applied but the field will show up in the results. This allows you to include fields you might be interested in seeing but not searching. Mdash; Contact Us.

2

ECMDB: Reactions

http://www.ecmdb.ca/reactions

E Coli Numbers and Stats. Reactions from ECMDB and 3079. Displaying entries 1 - 25. Rarr; Formic acid. Reduced Thioredoxin → dADP. Reduced Thioredoxin → dGDP. Reduced Thioredoxin → dCDP. Reduced Thioredoxin Uridine 5-diphosphate. Harr; Acetic acid. 2 flavodoxin semi oxidized. 2 flavodoxin semi oxidized Pyruvic acid. 2 Flavodoxin reduced Hydrogen ion. 2 flavodoxin semi oxidized. 2 Flavodoxin reduced 2 Hydrogen ion. 2 flavodoxin semi oxidized Water. 2 flavodoxin semi oxidized. 2 flavodoxin semi oxidized.

3

ECMDB: Classification Browse

http://www.ecmdb.ca/classyfication

E Coli Numbers and Stats. Displaying classifications 1 - 30. Organic acids and derivatives. Keto acids and derivatives. Short-chain keto acids and derivatives. Nucleosides, nucleotides, and analogues. Nucleosides, nucleotides, and analogues. Organic acids and derivatives. Keto acids and derivatives. Short-chain keto acids and derivatives. Organic acids and derivatives. Hydroxy acids and derivatives. Beta hydroxy acids and derivatives. Organic acids and derivatives. Organic carbonic acids and derivatives.

4

ECMDB: Pathways

http://www.ecmdb.ca/pathways

E Coli Numbers and Stats. Pathways from Kegg, 312. Pathways from Ecocyc and 1223. Displaying entries 1 - 25. Citrate cycle (TCA cycle). Benzoate degradation via CoA ligation. Reductive carboxylate cycle (CO2 fixation). Alanine, aspartate and glutamate metabolism. Arginine and proline metabolism. Starch and sucrose metabolism. Cysteine and methionine metabolism. Phenylalanine, tyrosine and tryptophan biosynthesis. Carbon fixation in photosynthetic organisms. Glycine, serine and threonine metabolism.

5

ECMDB: About ECMDB

http://www.ecmdb.ca/about

E Coli Numbers and Stats. ECMDB Version 2.0. ECMDB is offered to the public as a freely available resource. Use and re-distribution of the data, in whole or in part, for commercial purposes requires explicit permission of the authors and explicit acknowledgment of the source material (ECMDB) and the original publication (see below). We ask that users who download significant portions of the database cite the ECMDB paper in any resulting publications. M2MDB Version 2.0. Mdash; Contact Us.

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cecafdb.org cecafdb.org

CeCaFDB - A curated database for flux distribution in central carbon metabolism systems.

http://www.cecafdb.org/download_action

Browse Metabolites and Reactions. Metab Eng. 2008 Jan;10(1):55-68. 13C-metabolic flux analysis of Actinobacillus succinogenes fermentative metabolism at different NaHCO3 and H2 concentrations. McKinlay JB, Vieille C. Metab Eng. 2007 Mar;9(2):177-92. Determining Actinobacillus succinogenes metabolic pathways and fluxes by NMR and GC-MS analyses of 13C-labeled metabolic product isotopomers. McKinlay JB, Shachar-Hill Y, Zeikus JG, et al. Click here to see download links. Click here to see download links.

metabolomicscentre.ca metabolomicscentre.ca

The Metabolomics Innovation Centre

http://www.metabolomicscentre.ca/software

The Human Metabolome Database (HMDB). The Toxin and Toxin Target Database (T3DB). Is a unique bioinformatics resource that combines detailed toxin data with comprehensive toxin target information. The database currently houses over 2900 toxins described by over 34 200 synonyms, including pollutants, pesticides, drugs, and food toxins, which are linked to over 1300 corresponding toxin target records. Altogether there are over 33 800 toxin, toxin target associations. The CSF Metabolome database. Is a freel...

cecafdb.org cecafdb.org

CeCaFDB - A curated database for flux distribution in central carbon metabolism systems.

http://www.cecafdb.org/index_action

Browse Metabolites and Reactions. Metab Eng. 2008 Jan;10(1):55-68. 13C-metabolic flux analysis of Actinobacillus succinogenes fermentative metabolism at different NaHCO3 and H2 concentrations. McKinlay JB, Vieille C. Metab Eng. 2007 Mar;9(2):177-92. Determining Actinobacillus succinogenes metabolic pathways and fluxes by NMR and GC-MS analyses of 13C-labeled metabolic product isotopomers. McKinlay JB, Shachar-Hill Y, Zeikus JG, et al. J Biotechnol. 2013 Dec;168(4):355-61. Metabolic flux analysis ...J Bio...

wishartlab.com wishartlab.com

Web Servers - Wishart Research Group

http://www.wishartlab.com/web_servers

Web Servers and Databases. The Human Metabolome Database. 1  Wishart DS, Tzur D, Knox C, et al., HMDB: the Human Metabolome Database. Nucleic Acids Res. 2007 Jan;35(Database issue):D521-6. 2  Wishart DS, Knox C, Guo AC, et al., HMDB: a knowledgebase for the human metabolome. Nucleic Acids Res. 2009 37(Database issue):D603-610. 3  Wishart DS, Jewison T, Guo AC, Wilson M, Knox C, et al., HMDB 3.0 The Human Metabolome Database in 2013. Nucleic Acids Res. 2013. Jan 1;41(D1):D801-7. 4  Wishart DS, Knox C...

cecafdb.org cecafdb.org

CeCaFDB - A curated database for flux distribution in central carbon metabolism systems.

http://www.cecafdb.org/home.jsp

Browse Metabolites and Reactions. It is intended to be used as a platform for the display, comparison and distribution of fluxomics experimental result.We attempt to cover as more flux distribution results as possible. New flux data are added monthly after they appeared publicly. Please let us know if some research have escaped our attention, its our duty to add them! 1 doi: 10.1093/nar/gku1137. Submit a new study. Seo Ecoli Metabolome Database.

cecafdb.org cecafdb.org

CeCaFDB - A curated database for flux distribution in central carbon metabolism systems.

http://www.cecafdb.org/compare.jsp

Browse Metabolites and Reactions. Please select at least tow. Enzyme Topology based similarity. Computation already begins.The result will be sended to you via e-mail. Please input valid e-mail,since this task might take a long time,the alignment result will be sent to your email. Lamda must be double value between 0.0 and 1.0. Seo Ecoli Metabolome Database.

cecafdb.org cecafdb.org

CeCaFDB - A curated database for flux distribution in central carbon metabolism systems.

http://www.cecafdb.org/reactants_action

Browse Metabolites and Reactions. Seo Ecoli Metabolome Database.

cecafdb.org cecafdb.org

CeCaFDB - A curated database for flux distribution in central carbon metabolism systems.

http://www.cecafdb.org/help.jsp

Browse Metabolites and Reactions. What kinds of Data are stored in this database. How to browse database. About Interactive visualization of flux distribution. How to Search through the database. The algorithm details for the flux comparison. How to compare flux distributions. How to download flux distributions. How to submit Data. What kinds of Data are stored in this database. The citation information of the reference. The specific strain name of the organism if it was mentioned in the reference. The C...

cecafdb.org cecafdb.org

CeCaFDB - A curated database for flux distribution in central carbon metabolism systems.

http://www.cecafdb.org/submit_study.jsp

Browse Metabolites and Reactions. Seo Ecoli Metabolome Database.

classyfire.wishartlab.com classyfire.wishartlab.com

ClassyFire

http://classyfire.wishartlab.com/about

Taxonomies and ontologies organize complex knowledge about concepts and their relationships. Currently, in contrast to biology, pharmacology, geology, and many other scientific disciplines, the world of chemistry still lacks a standard taxonomy/ontology. Moreover, the manual or semi-automated classification attempts that have been presented so far have proven cost-expensive, error-prone, or not comprehensive enough to provide detailed classifications for the tens of millions of compounds that are...And t...

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E. Coli Metabolome Database

About the E. Coli Metabolome Database. You are using an unsupported browser. Please upgrade your browser to a newer version to get the best experience on E. Coli Metabolome Database. ECMDB Version 1.0. The E Coli Metabolome Database (ECMDB) is a manually curated database of small molecule metabolites found in or produced by Escherichia coli (strain K12, MG1655). This database covers metabolites described in textbooks, scientific journals, metabolic reconstructions and other electronic databases. ECMD...

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