ecoengine.berkeley.edu

Berkeley Ecoinformatics Engine

An open API serving UC Berkeley's Natural History Data. API access and documentation for developers interested in building their own applications. Access to data and tools for researchers interested in analysis. Updates from the development and research team. We are beta-testing the Berkeley Ecoinformatics Engine. The data currently served by the Ecoengine are for test use only as we work on software performance, data integration, and display. Thanks for your help!

http://ecoengine.berkeley.edu/

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Berkeley Ecoinformatics Engine | ecoengine.berkeley.edu Reviews

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An open API serving UC Berkeley's Natural History Data. API access and documentation for developers interested in building their own applications. Access to data and tools for researchers interested in analysis. Updates from the development and research team. We are beta-testing the Berkeley Ecoinformatics Engine. The data currently served by the Ecoengine are for test use only as we work on software performance, data integration, and display. Thanks for your help!

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Berkeley Ecoinformatics Engine | ecoengine.berkeley.edu Reviews

https://ecoengine.berkeley.edu

An open API serving UC Berkeley's Natural History Data. API access and documentation for developers interested in building their own applications. Access to data and tools for researchers interested in analysis. Updates from the development and research team. We are beta-testing the Berkeley Ecoinformatics Engine. The data currently served by the Ecoengine are for test use only as we work on software performance, data integration, and display. Thanks for your help!

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ecoengine.berkeley.edu

1

Berkeley Ecoinformatics Engine — Berkeley Ecoinformatics Engine 0.4.1 documentation

https://ecoengine.berkeley.edu/docs

Wieslander Vegetation Type Mapping Project (VTM). Using the built-in Search Engine. Access options and limits. We are excited to open UC Berkeley’s ecological resources to a wide audience. By developing visualizations and tools around the Berkeley Ecoinformatics Engine you can help researchers explore and understand key findings to our changing environment that may be hidden in UC’s vast data repositories. Built on the Django REST framework. Engine vs. Archive. Current Status of the Ecoengine.

2

Berkeley Ecoinformatics Engine

https://ecoengine.berkeley.edu/examples

A simple example for charting sensor data from the API using D3.js. Photo discovery and reshots. This example is the result of our internal mini code sprint on June 28 and 29, 2013. Build with Ruby on Rails using the API and leaflet.js. For contributions to this project fork https:/ github.com/berkeley-gif/btake2. This example uses D3.js to visualize a taxonomy tree for the selected observations (species lists).

3

Berkeley Ecoinformatics Engine API 0.4.1

https://ecoengine.berkeley.edu/api

Berkeley Ecoinformatics Engine API 0.4.1. The entry endpoint of the API. GET, HEAD, OPTIONS. Wieslander vegetation type mapping: { vtm plot data tree attributes: https:/ ecoengine.berkeley.edu/api/vtmplots trees/. Vtm plot data: https:/ ecoengine.berkeley.edu/api/vtmplots/. Vtm plot data brushes attributes: https:/ ecoengine.berkeley.edu/api/vtmplots brushes/. Vtm features: https:/ ecoengine.berkeley.edu/api/vtmveg/. Data: { checklists: https:/ ecoengine.berkeley.edu/api/checklists/.

4

Berkeley Ecoinformatics Engine

https://ecoengine.berkeley.edu/news

Version 0.3.0 released. July 20, 2014. We released a new version of the Ecoengine. We now serve the complete data of the Wieslander Vegetation Type Mapping Project (VTM) including vegetation features and plot data. There are a few potentially breaking changes. Most significantly, we moved to secured internet connections (SSL). Your application might break if it cannot handle redirected responses. Please use https instead of http in your requests. For additional changes see our changelog. January 30, 2014.

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globalchange.berkeley.edu

The HOLOS Ecoinformatics Engine is live! | BiGCB

http://globalchange.berkeley.edu/holos-ecoinformatics-engine-live

Skip to main content. The HOLOS Ecoinformatics Engine is live! Please visit the interactive, user-friendly portal here: https:/ holos.berkeley.edu/. The "Ecoengine" is an informatics tool that has:. Organize, unify, and serve a wealth of "event" data from UC Berkeley’s labs, natural history museums, and field stations. Organize, unify, and serve an array of baselayers relevant to ecological analysis including climate, land cover/use, vegetation indices, hydrology, fire, and other freely available datasets.

holos.berkeley.edu

Holos | Compare

https://holos.berkeley.edu/compare

Data Mobilization and Discovery. Associated Publications and Presentations. API and API Documentation. Help with Explore and Compare. Github Repos and Code. US Ecoregions Level III. NEX ensemble average minimum temperature 2031-02-15. NEX ensemble average minimum temperature 2031-03-16. NEX ensemble average minimum temperature 2031-04-16. NEX ensemble average minimum temperature 2031-05-16. NEX ensemble average minimum temperature 2031-06-16. NEX ensemble average minimum temperature 2031-07-16. NEX ensem...

holos.berkeley.edu

Holos | Associated Publications & Presentations

https://holos.berkeley.edu/about/publications-presentations

Data Mobilization and Discovery. Associated Publications and Presentations. API and API Documentation. Help with Explore and Compare. Github Repos and Code. Associated Publications and Presentations. Mcintyre, P.J., J.H. Thorne, C.R. Dolanc, A.L. Flint, L.E. Flint, M. Kelly and D.A. Ackerly. (2015). Twentieth-century shifts in forest structure in California: Denser forests, smaller trees, and increased dominance of oaks. Proceedings of the National Academy of Sciences. Methods in Ecology and Evolution.

holos.berkeley.edu

Holos | Explore

https://holos.berkeley.edu/explore

Data Mobilization and Discovery. Associated Publications and Presentations. API and API Documentation. Help with Explore and Compare. Github Repos and Code. Get query for Compare. Copy this URL to share the page. Note that dropdown selections (such as raster layers) are currently not saved. Only parameters used to query the observations API are shared. These are the queries used to generate the interface on this page. Download a tab-delimited list of unique species names from your query.).

holos.berkeley.edu

Holos | Github Repos and Code

https://holos.berkeley.edu/resources/github-repos-and-code

Data Mobilization and Discovery. Associated Publications and Presentations. API and API Documentation. Help with Explore and Compare. Github Repos and Code.

holos.berkeley.edu

Holos | Help with Explore and Compare

https://holos.berkeley.edu/resources/help

Data Mobilization and Discovery. Associated Publications and Presentations. API and API Documentation. Help with Explore and Compare. Github Repos and Code. Help with Explore and Compare. For a quick introduction to the user interfaces. See the Q&A below for more information. What data are displayed for each record? How do you download data from the Explore tool? Why are there so few points plotted on the map when there are so many records available? Why doesn't back button in my browser work? These are ...

ropensci.org

rOpenSci - Packages

https://www.ropensci.org/packages

This is a complete list of all available rOpenSci packages. Packages are grouped by ones that acquire data. Full-text of journal articles. Focus on scalable and reproducibile computing. Work Packages with a cran. Sign are stable versions that you can quickly install from your nearest mirror using. Others are in various stages of development (bleeding edge packages are not listed here) and you can learn more by following our GitHub organization page. And our GitHub organization for bleeding edge projects.

holos.berkeley.edu

Holos | Our Team

https://holos.berkeley.edu/about/people

Data Mobilization and Discovery. Associated Publications and Presentations. API and API Documentation. Help with Explore and Compare. Github Repos and Code. Photo by Glenn and Martha Vargas. Professor, Department of Environmental Sciences, Policy and Management. Professor, Department of Integrative Biology. Professor, Department of Integrative Biology. Professor, Department of Environmental Sciences, Policy and Management. Biodiversity Informatics and GIS Staff Curator, Museum of Vertebrate Zoology.

holos.berkeley.edu

Holos | About

https://holos.berkeley.edu/about

Data Mobilization and Discovery. Associated Publications and Presentations. API and API Documentation. Help with Explore and Compare. Github Repos and Code. Cook Peak near Isabella (1927) superimposed with Lake Isabella (2013), Kernville, California. Mashup by H. Constable. Holos: Mobilizing Data for Understanding Global Change. Aims to digitize and aggregate many diverse biological. Collections into the Berkeley Ecoinformatics Engine. We intentionally separate the data collection from the application in...

holos.berkeley.edu

Holos | Data Mobilization & Discovery

https://holos.berkeley.edu/about/data-discovery

Data Mobilization and Discovery. Associated Publications and Presentations. API and API Documentation. Help with Explore and Compare. Github Repos and Code. Data Mobilization and Discovery. A significant goal of the Berkeley Ecoinformatics Engine project was to uncover "dark" data, mobilize isolated collections, and digitize targeted specimens within the Berkeley Natural History Museums and Berkeley's research labs. Become available for exploration in the Explore and Compare tools.

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ecoengine.berkeley.edu

Berkeley Ecoinformatics Engine

An open API serving UC Berkeley's Natural History Data. API access and documentation for developers interested in building their own applications. Access to data and tools for researchers interested in analysis. Updates from the development and research team. We are beta-testing the Berkeley Ecoinformatics Engine. The data currently served by the Ecoengine are for test use only as we work on software performance, data integration, and display. Thanks for your help!

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