jimhu.org
web development | Blogs for Industry
http://jimhu.org/category/web-development
Blogs for the dead. About Blogs for Industry. Category Archives: web development. JSmol2wp plugin released at wordpress.org. A while ago I wrote a WordPress shortcode plugin to embed Bob Hanson’s JSmol. Molecular structure viewer into WordPress posts and pages. Last weekend I finally got it into the wordpress.org plugin repository. The basic usage for proteins is via a shortcode like this:. The plugin fetches the appropriate record from the PDB and generates an applet like this:. February 2, 2015. PortEc...
jimhu.org
Black Forest Cake part 2: Everything else | Blogs for Industry
http://jimhu.org/black-forest-cake-part-2-everything-else
Blogs for the dead. About Blogs for Industry. Black Forest Cake part 2: Everything else. Once the Genoise was cooled, I made cake syrup and chocolate shavings (sort of). Cake syrup is just 50% sucrose plus flavorings. The recipe calls for 50% syrup an 50% Kirsch. We didn’t have Kirsch and Texas doesn’t sell anything over 17% alcohol on Sundays. So I used some Frambois we had around. We tried to make the chocolate shavings using this method. This entry was posted in food. April 27, 2015. On Yet more testi...
jimhu.org
Testing JSmol2wp | Blogs for Industry
http://jimhu.org/testing-jsmol2wp
Blogs for the dead. About Blogs for Industry. Dragging should rotate the model, which is embedded via a shortcode that passes a bunch of parameters, including the PDB accession, the caption, and code to create custom buttons and other interface elements. The buttons run Jmol scripts to select, zoom, recolor etc. The plugin detects multiple instances of the shortcode that creates the applets as long as they use different pdb accessions. This is the structure of the CynR DNA binding domain from a local file.
jimhu.org
JSmol2wp plugin released at wordpress.org | Blogs for Industry
http://jimhu.org/jsmol2wp-plugin-released-at-wordpress-org
Blogs for the dead. About Blogs for Industry. JSmol2wp plugin released at wordpress.org. A while ago I wrote a WordPress shortcode plugin to embed Bob Hanson’s JSmol. Molecular structure viewer into WordPress posts and pages. Last weekend I finally got it into the wordpress.org plugin repository. The basic usage for proteins is via a shortcode like this:. The plugin fetches the appropriate record from the PDB and generates an applet like this:. This entry was posted in computer stuff. February 2, 2015.
jimhu.org
More JSmol2wp testing | Blogs for Industry
http://jimhu.org/more-jsmol2wp-testing
Blogs for the dead. About Blogs for Industry. As of version 0.7, I wonder whether having two posts with viewers causes applet name clashes. The prediction is that this would work while viewing one post, but not on the home page. This prediction turned out to be true. This first item loaded the first one from the next post, while the first item in the next post didn’t load. Should work now in 0.8. Load file from Henry Rzepa's blog. This entry was posted in science. June 12, 2014. On More JSmol2wp testing.
jimhu.org
food | Blogs for Industry
http://jimhu.org/category/food
Blogs for the dead. About Blogs for Industry. Inadvertent lower-fat lemon curd tarts. To use up the leftover antique puff pastry, I decided to make little tarts with sous vide lemon curd. There are lots of sous vide lemon curd recipes out there but I based mine this one. Due to various distractions (like the Dr. Who marathon on BBC America), I left out a key ingredient: butter.The resulting curd was still pretty tasty so I used it anyway. Mix:. Juice from 2 lemons. This entry was posted in food. Sous vid...
wiki.jmol.org
Jmol Wiki - Wikis Using Jmol
http://wiki.jmol.org/index.php/Wikis_Using_Jmol
J(S)mol in the Classroom. Icons, images, templates, scripts). Jmol can be embedded in wiki pages. If you know a Wiki which uses Jmol, and which is not in the list below, please add it. On DokuWiki with Jmol plugin). And its Jmol plugin page. Dedicated Wiki for Folding@Home. Introductory molecular mechanics modelling course (uses MediaWiki. Advanced molecular modelling course (uses MediaWiki. A tool for reducing cube files to jvxl files for embedding in a Wiki (uses MediaWiki.
jimhu.org
Chocolate-cayenne cake with raspberry filling | Blogs for Industry
http://jimhu.org/chocolate-cayenne-cake-with-raspberry-filling
Blogs for the dead. About Blogs for Industry. Chocolate-cayenne cake with raspberry filling. The pseudo Black Forest Cake was a success a couple of weeks ago (yes, posting here is. Sporadic) and I was talking about it with one of the grad students as part of a broader conversation about cooking. This inspired her to make Colombian empanadas. And I found one at my desk on Friday. Yum! 3/4 cup cake flour. 1/4 cup cocoa powder. 1/2 tsp kosher salt. 1/2 tsp cayenne pepper. 1 tsp vanilla extract. Last time I ...
jimhu.org
Sous vide brunch | Blogs for Industry
http://jimhu.org/sous-vide-brunch
Blogs for the dead. About Blogs for Industry. Melt half a stick of butter. While melting, in the processor bowl. Juice of a lemon. Add the melted butter. After processing, I suspect that the butter was not hot enough to cook the egg yolks, and the sauce was too thin. So I tranferred the sauce to a stainless bowl and used the 170F sous vide that was cooking the eggs as a double boiler bath and whisked the hollandaise until it thickened. Two circulators going at once! This entry was posted in food.
