efaecium.mlst.net

Enterococcus faecium - Database

Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. The E faecium site has now transferred - other species databases will be migrating to PubMLST.org in due course. This agreement will provide the security of these MLST databases for the benefit of the international microbiology community. David Aanensen and Brian Spratt.

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Enterococcus faecium - Database | efaecium.mlst.net Reviews

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Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. The E faecium site has now transferred - other species databases will be migrating to PubMLST.org in due course. This agreement will provide the security of these MLST databases for the benefit of the international microbiology community. David Aanensen and Brian Spratt.

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1 mlst

2 mlstnet

3 efaecium mlst net

4 data analysis

5 databases

6 bburgdorferi

7 bcereus

8 bhenselae

9 bpseudomallei

10 calbicans

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Enterococcus faecium - Database | efaecium.mlst.net Reviews

https://efaecium.mlst.net

Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. The E faecium site has now transferred - other species databases will be migrating to PubMLST.org in due course. This agreement will provide the security of these MLST databases for the benefit of the international microbiology community. David Aanensen and Brian Spratt.

INTERNAL PAGES

efaecium.mlst.net

1

Enterococcus faecium - Download STs

http://efaecium.mlst.net//sql/download_st.asp

Download STs and allelic profiles. We shall be offering alternative download formats very shortly -. To download in HTML format Click here.

2

Concatenation

http://efaecium.mlst.net//sql/concatenate/default.asp

CONCATENATE ONE EXAMPLE OF EACH ST in MEGA. Format or CLICK HERE. To add your own profile to the reference set of STs. THE NUCLEOTIDE SEQUENCES AT THE SEVEN LOCI - Please enter the ST numbers of the STs whose sequences you would like to concatenate, ie 46 for ST46. YOUR OWN ALLELIC PROFILE - Enter your profile below. Below each box is the highest allele number present in the database). YOUR OWN SEQUENCES (enter only 1 unbroken string ie no line breaks etc.).

3

Enterococcus faecium - Database

http://efaecium.mlst.net/default.asp

Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. The E faecium site has now transferred - other species databases will be migrating to PubMLST.org in due course. This agreement will provide the security of these MLST databases for the benefit of the international microbiology community. David Aanensen and Brian Spratt.

4

Enterococcus faecium - Organismal Information

http://efaecium.mlst.net/misc/info.asp

The MLST scheme was developed in the laboratory of Rob Willems. In The National Institute of Public Health and the Environment (RIVM). Netherlands in collaboration with David Tribe. At The University of Melbourne, Australia. Tribe D, Poznanski S, Li M, Hogg G, Spalburg E, Van Embden JD, Willems RJ: Multilocus sequence typing scheme for. J Clin Microbiol 2002 Jun; 40(6). Primers and PCR conditions for MLST of E. faecium. Adk1, 5’-TATGAACCTCATTTTAATGGG-3’. Adk2, 5’-GTTGACTGCCAAACGATTTT-3’. PCR reactions ar...

5

MLST - Unique profile treedraw

http://efaecium.mlst.net/eburst

Click here to see new features in Version 3. Please make a choice -. Enter your own profile data. Run eBURST on the entire. To download the entire eBURSTv3 readme as .pdf. Or for full instructions and Readme please visit http:/ eburst.mlst.net.

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sepidermidis.mlst.net

Staphylococcus epidermidis - Organismal Information

http://sepidermidis.mlst.net/earth

View geographical locations of isolates in the database and details regarding Sequence Types per country. Click the Google icon to view Staphylococcus epidermidis. A Javascript enabled browser is required. An Installation of Google Earth is required.

sepidermidis.mlst.net

Staphylococcus epidermidis - Links

http://sepidermidis.mlst.net/misc/links.asp

sepidermidis.mlst.net

Staphylococcus epidermidis - Organismal Information

http://sepidermidis.mlst.net/misc/info.asp

Multilocus sequence typing of Staphylococcus epidermidis. PCR Conditions and Sequencing. Determining Allelic Numbers and Sequence Types. Comparison of Isolates With the S. epidermidis. Has become a leading cause of nosocomial infections. Its ability to produce a thick, multilayered biofilm allows S. epidermidis. Remains a clinically important pathogen. Three MLST schemes were previously available for S. epidermidis. Two of which were published during the same month by Wang et al. And Wisplinghoff et al.

sepidermidis.mlst.net

MLST - Unique profile treedraw

http://sepidermidis.mlst.net/eburst

Click here to see new features in Version 3. Please make a choice -. Enter your own profile data. Run eBURST on the entire. To download the entire eBURSTv3 readme as .pdf. Or for full instructions and Readme please visit http:/ eburst.mlst.net.

chlamydia.mlst.net

Chlamydia trachomatis - Database

http://chlamydia.mlst.net/default.asp

Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. This agreement will provide a home for the MLST database for the benefit of the international microbiology community. David Aanensen and Brian Spratt. To access the database please visit: http:/ pubmlst.org/chlamydiales/.

chlamydia.mlst.net

Chlamydia trachomatis - Download STs

http://chlamydia.mlst.net//sql/download_st.asp

Download STs and allelic profiles. Click to view as HTML. Click to view as comma delimited text. Click to view as TAB delimited text. Click to concatenate STs in MEGA format. Click to concatenate STs in FASTA format.

chlamydia.mlst.net

Chlamydia trachomatis - Organismal Information

http://chlamydia.mlst.net/misc/info.asp

Belongs to the family Chlamydiaceae, order Chlamydiales. It is an obligate intracellular human pathogen that is responsible for the leading cause of preventable blindness and bacterial sexually transmitted diseases (STD) worldwide. Species are the virulent lymphogranuloma venereum (LGV) strains that cause invasive diseases including suppurative lymphadenitis and hemorrhagic proctitis. A novel MLST scheme has recently been developed for. By Deborah Dean, Raymond Wan, Tigist Mehari (Children’s Hospit...

chlamydia.mlst.net

MLST - Unique profile treedraw

http://chlamydia.mlst.net/eburst

Click here to see new features in Version 3. Please make a choice -. Enter your own profile data. Run eBURST on the entire. To download the entire eBURSTv3 readme as .pdf. Or for full instructions and Readme please visit http:/ eburst.mlst.net.

chlamydia.mlst.net

Chlamydia trachomatis - Links

http://chlamydia.mlst.net/misc/links.asp

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Enterococcus faecalis - Database

No STs - 623. No Isolates - 1201. Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. David Aanensen and Brian Spratt. To access the database please visit: http:/ pubmlst.org/efaecalis/. NB This site will no longer be up-to-date as all new strains are now only being added to the PubMLST site. Compare profile to refset.

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efaecium.mlst.net

Enterococcus faecium - Database

Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. The E faecium site has now transferred - other species databases will be migrating to PubMLST.org in due course. This agreement will provide the security of these MLST databases for the benefit of the international microbiology community. David Aanensen and Brian Spratt.

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