alkanlab.org
Alkan Lab
http://www.alkanlab.org/links.html
Bioinformatics and Computational Genomics Group. Department of Computer Engineering, Bilkent University. S Cenk Şahinalp, Lab for Computational Biology. Simon Fraser University, Burnaby, BC, Canada. Evan E. Eichler, Eichler Lab. University of Washington, Seattle, WA, United States. Fereydoun Hormozdiari, UC Davis Computational Genomics. UC Davis, Davis, CA, United States. Pennsylvania State University, University Park, PA, USA. Carnegie Mellon University, Pittsburgh, PA, United States. Ryan E. Mills.
alkanlab.org
Alkan Lab
http://www.alkanlab.org/people.html
Bioinformatics and Computational Genomics Group. Department of Computer Engineering, Bilkent University. Can Alkan, Ph.D. Assistant Professor, January 2012 - present. Department of Computer Engineering. Acting Assistant Professor, June 2011 - January 2012. Department of Genome Sciences. Seattle, WA, United States. Postdoctoral Fellow, October 2005 - June 2011. Department of Genome Sciences, U. Washington. Seattle, WA, United States. Visiting Scholar, January 2004 - October 2005. Cleveland, OH, USA. Worce...
donut.cs.bilkent.edu.tr
Alkan Lab
http://donut.cs.bilkent.edu.tr/links.html
Bioinformatics and Computational Genomics Group. Department of Computer Engineering, Bilkent University. S Cenk Şahinalp, Lab for Computational Biology. Simon Fraser University, Burnaby, BC, Canada. Evan E. Eichler, Eichler Lab. University of Washington, Seattle, WA, United States. Fereydoun Hormozdiari, UC Davis Computational Genomics. UC Davis, Davis, CA, United States. Pennsylvania State University, University Park, PA, USA. Carnegie Mellon University, Pittsburgh, PA, United States. Ryan E. Mills.
donut.cs.bilkent.edu.tr
Alkan Lab
http://donut.cs.bilkent.edu.tr/people.html
Bioinformatics and Computational Genomics Group. Department of Computer Engineering, Bilkent University. Can Alkan, Ph.D. Assistant Professor, January 2012 - present. Department of Computer Engineering. Acting Assistant Professor, June 2011 - January 2012. Department of Genome Sciences. Seattle, WA, United States. Postdoctoral Fellow, October 2005 - June 2011. Department of Genome Sciences, U. Washington. Seattle, WA, United States. Visiting Scholar, January 2004 - October 2005. Cleveland, OH, USA. Worce...
mrhgsv.gs.washington.edu
Introduction
http://mrhgsv.gs.washington.edu/general/intro.html
Web and Browser Contact. The objective of the Human Genome Structural Variation Project is to characterize the extent of structural variation (deletions, insertions, inversions, and other rearrangements) at the sequence level ( HGSV Working Group, 2007. This database describes results of an initial analysis of eight individuals. The analyzed samples have been previously studied as part of the International HapMap Project. This database contains the data reported in Kidd et al (2008).
mrhgsv.gs.washington.edu
Description of Browser Tracks
http://mrhgsv.gs.washington.edu/general/desc.html
Web and Browser Contact. Description of Browser Tracks. The HGSV browser contains standard annotation tracks (genes, repeats, etc) generated by UCSC. Additionally, there are several tracks reporting data specific to the structural variation project. UW Primate Clone End Tracks. These tracks report the individual ESP mappings for 9 fosmid libraries (the G248 library plus ABC7-ABC14). The correspondence between library name and samples is given below. Tracks. In order to improve visualization, discorda...
mrhgsv.gs.washington.edu
Data Download
http://mrhgsv.gs.washington.edu/general/download.html
Web and Browser Contact. Validated Sites of Structural Variation. Formatted and compressed files are available for bulk data download. The most useful file is likely to be the listing of sample level, validated sites of structural variation. This table is available here. Files describing the “novel”sequences not found in the build35 reference are available here. Single Nucleotide and Small Insertions-Deletion Variants. These files represent the raw end-sequence mapping data and are available here. Clonel...