elaspic.kimlab.org

ELASPIC

Pick protein and mutation. Predict stability effects of mutations on protein folding and interactions. First, input a protein ID such as Q9BUL8. Or upload PDB structure. Now, select a mutation:. Interactions affected by mutation:. Warning: mutation is not in a domain. Warning: because the selected protein is not human, the calculations can take up to several hours. Your email address (optional):. For more information about the mechanisms of ELASPIC, see the published paper. Final ΔΔG. Final ΔΔG.

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ELASPIC | elaspic.kimlab.org Reviews

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Pick protein and mutation. Predict stability effects of mutations on protein folding and interactions. First, input a protein ID such as Q9BUL8. Or upload PDB structure. Now, select a mutation:. Interactions affected by mutation:. Warning: mutation is not in a domain. Warning: because the selected protein is not human, the calculations can take up to several hours. Your email address (optional):. For more information about the mechanisms of ELASPIC, see the published paper. Final ΔΔG. Final ΔΔG.

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2 single mutation

3 multiple mutations

4 protein input

5 seq iden

6 model score

7 foldx

8 coupons

9 reviews

10 scam

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ELASPIC | elaspic.kimlab.org Reviews

https://elaspic.kimlab.org

Pick protein and mutation. Predict stability effects of mutations on protein folding and interactions. First, input a protein ID such as Q9BUL8. Or upload PDB structure. Now, select a mutation:. Interactions affected by mutation:. Warning: mutation is not in a domain. Warning: because the selected protein is not human, the calculations can take up to several hours. Your email address (optional):. For more information about the mechanisms of ELASPIC, see the published paper. Final ΔΔG. Final ΔΔG.

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ELASPIC

http://elaspic.kimlab.org/many

Input proteins with mutations. Predict stability effects of mutations on protein folding and interactions. Use the format protein.mutation. Warning: because some of the selected proteins are not human, the calculations can take up to several hours. Your email address (optional):. Because ELASPIC uses structures of protein domains to predict stability/affinity effects, the mutation has to fall within domain boundries. For more information about the mechanisms of ELASPIC, see the published paper.

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ELASPIC - Help

http://elaspic.kimlab.org/help

Source and file download. The webserver relies on two different pipelines: Profs. Flowchart of ELASPIC pipeline. Click to view in full size. Unifies domain definitions obtained from Pfam and CATH in order to create domain boundaries that are the most consistent with both with the structural fold and the evolutionary conservation of the protein. Profs domain boundaries for the entire Uniprot database can be downloaded here. An R package implementing the Profs pipeline is hosted on bitbucket. Warning: as o...

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ELASPIC - Reference

http://elaspic.kimlab.org/reference

If you use results generated by the ELASPIC webserver, please cite the paper:. Daniel K. Witvliet, Alexey Strokach, Andrés Felipe Giraldo-Forero, Joan Teyra, Recep Colak, Philip M. Kim (2016) ELASPIC web-server: proteome-wide structure based prediction of mutation effects on protein stability and binding affinity. Bioinformatics. For more information about the ELASPIC algorithm, please see:. 2016 – Kim Lab. 8211; Donnelly Centre. 8211; University of Toronto.

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Sun MGF*, Seo MH*, Nim S, Corbi-Verge C, Kim PM. Protein Engineering by highly parallel screening of computational designed variants. 20 Jul 2016: Vol. 2, no. 7, e1600692. Jeon J, Arnold R, Singh F, Teyra J, Braun T, Kim PM. PAT: predictor for structured units and its application for the optimization of target molecules for the generation of synthetic antibodies. BMC Bioinformatics. 2016 Apr 1;17:150. doi: 10.1186/s12859-016-1001-1. [PDF]. Corbi-Verge C, Kim PM. Tarasova N, Kim PM. Na H, Laver JD,. ELASP...

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elaspic.kimlab.org

ELASPIC

Pick protein and mutation. Predict stability effects of mutations on protein folding and interactions. First, input a protein ID such as Q9BUL8. Or upload PDB structure. Now, select a mutation:. Interactions affected by mutation:. Warning: mutation is not in a domain. Warning: because the selected protein is not human, the calculations can take up to several hours. Your email address (optional):. For more information about the mechanisms of ELASPIC, see the published paper. Final ΔΔG. Final ΔΔG.

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