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CeNDR | Caenorhabditis elegans Natural Diversity Resource

Natural Diversity Resource (CeNDR) at Northwestern University provides three major services:. Collection, maintenance, and distribution of wild. Organization and dissemination of whole-genome sequences for wild. Facilitation of genetic mappings to empower individual researchers in gene discovery. Isolates and information are available. Aligned sequence data and variant data for. Wild isolates are available. Map your own traits using genome-wide association. Binary test bump bump. August 2016 CeNDR Updates.

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CeNDR | Caenorhabditis elegans Natural Diversity Resource | elegansvariation.org Reviews
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Natural Diversity Resource (CeNDR) at Northwestern University provides three major services:. Collection, maintenance, and distribution of wild. Organization and dissemination of whole-genome sequences for wild. Facilitation of genetic mappings to empower individual researchers in gene discovery. Isolates and information are available. Aligned sequence data and variant data for. Wild isolates are available. Map your own traits using genome-wide association. Binary test bump bump. August 2016 CeNDR Updates.
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CeNDR | Caenorhabditis elegans Natural Diversity Resource | elegansvariation.org Reviews

https://elegansvariation.org

Natural Diversity Resource (CeNDR) at Northwestern University provides three major services:. Collection, maintenance, and distribution of wild. Organization and dissemination of whole-genome sequences for wild. Facilitation of genetic mappings to empower individual researchers in gene discovery. Isolates and information are available. Aligned sequence data and variant data for. Wild isolates are available. Map your own traits using genome-wide association. Binary test bump bump. August 2016 CeNDR Updates.

INTERNAL PAGES

elegansvariation.org elegansvariation.org
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CeNDR | DISANCII > DISANCII4

https://www.elegansvariation.org/report/disancii/disancii4

Histogram representation of your phenotype. Your phenotype is significantly associated with genetic variation present in the. A genome-wide representation of the association between variation in the. Population and your phenotype. The x-axis corresponds to genomic position with chromosome number indicated as a roman numeral above each box. Dots represent single-nucleotide variants (SNV) present in the. And is usually around 5.5. QTL Genomic Region of Interest. 1 moderate impact variant" Moderate. Moderat...

2

CeNDR | Browser

https://www.elegansvariation.org/data/browser

Maximum of 1000 variants from the region will be listed. Variants without a black border have a filter applied, and are less reliable.

3

CeNDR | DISANCII > DISANCII15

https://www.elegansvariation.org/report/disancii/disancii15

Histogram representation of your phenotype. Unfortunately your phenotype was not significantly associated with genetic variation present in the. Population. This could be due to noisy trait data - have you performed heritability analysis for your phenotype using our heritability strain panel? If you have and the heritability was found to be high for this trait, the trait might not have reached statistical significance because it is highly complex and more strains need to be phenotyped.

4

CeNDR | FAQ

https://www.elegansvariation.org/help

How do I run the BAM and CRAM download scripts? The BAM and CRAM download scripts require wget. Once you have wget, follow the instructions at the top of the scripts. Mac OS or Linux. Can be obtained using homebrew. On Mac OSX. Install homebrew, then type:. Then install the wget package. How do I use the API? The Application Programming Interface (API) can be used to access the CeNDR database and make a variety of queries. The API documentation. Fetch a dataframe of strain data.

5

CeNDR | August 2016 CeNDR Updates

https://www.elegansvariation.org/news/2016-08-09-August-2016-CeNDR-Updates

August 2016 CeNDR Updates. August 2016 CeNDR Updates. August 2016 CeNDR Updates. We have added gene pages. Which feature mappings, variants, and more. We have added an API. We will begin versioning the website, snp-sets, and strain data. The website is now considered to be version 1.0.0! An issue with strain names being returned with phenotype data was fixed. Function has been added! August 2016 CeNDR Updates. May 2016 CeNDR Updates.

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andersenlab.org andersenlab.org

Andersen Lab | The Domestication of

http://andersenlab.org/2015/03/21/domestication-paper-announcement

Is published in Trends in Genetics. Mar 21, 2015. Is published in Trends in Genetics. Is published in Trends in Genetics. The laboratory domestication of. Sterken MG, Snoek LB, Kammenga JE, Andersen EC. Telomere paper accepted at. Mostafa accepts position at Madison! Mostafa's review published in. Prospects and challenges of CRISPR/Cas genome editing for the study and control of neglected vector-borne nematode diseases.". Kristen is moving to the Broad! Robert Lurie Comprehensive Cancer Center.

andersenlab.org andersenlab.org

Andersen Lab | Congratulations to Tyler!

http://andersenlab.org/2015/04/01/Tyler-Awarded-NSF-GRFP

Apr 1, 2015. Tyler Shimko receives an NSF Graduate Research Fellowship. Telomere paper accepted at. Mostafa accepts position at Madison! Mostafa's review published in. Prospects and challenges of CRISPR/Cas genome editing for the study and control of neglected vector-borne nematode diseases.". Kristen is moving to the Broad! Erik receives IDP/Sherman Fairchild Cancer Innovation Award. Robert Lurie Comprehensive Cancer Center. Chemistry of Life Processes Institute.

andersenlab.org andersenlab.org

Andersen Lab | Congratulations to Erik!

http://andersenlab.org/2015/04/03/Erik-ACS-Award

Apr 3, 2015. Erik receives a Research Scholar Grant from the American Cancer Society to fund research into chemotherapy cytotoxicity variation for the next four years. Telomere paper accepted at. Mostafa accepts position at Madison! Mostafa's review published in. Prospects and challenges of CRISPR/Cas genome editing for the study and control of neglected vector-borne nematode diseases.". Kristen is moving to the Broad! Erik receives IDP/Sherman Fairchild Cancer Innovation Award.

andersenlab.org andersenlab.org

Andersen Lab | Congratulations to Stefan!

http://andersenlab.org/2015/02/26/Stefan-awarded-CMBD-Training-Grant

Feb 26, 2015. Stefan Zdraljevic was named to the Cellular and Molecular Basis of Disease Training Grant. Telomere paper accepted at. Mostafa accepts position at Madison! Mostafa's review published in. Prospects and challenges of CRISPR/Cas genome editing for the study and control of neglected vector-borne nematode diseases.". Kristen is moving to the Broad! Erik receives IDP/Sherman Fairchild Cancer Innovation Award. Robert Lurie Comprehensive Cancer Center. Chemistry of Life Processes Institute.

andersenlab.org andersenlab.org

Andersen Lab | Outreach

http://andersenlab.org/Outreach

Collect nematodes as a Citizen Scientist! Research community is looking for new wild strains from throughout the world! If you would like to help us. Please feel free to contact us. We will send you everything you need to isolate your own nematodes. After you mail the samples back to us, we will tell you (as much as we can) about what species you found. The procedure is very easy. Collect rotting vegetation: fruits, tubers, seeds, flowers, bark, nuts, etc. Put the samples on the provided agar plates.

andersenlab.org andersenlab.org

Andersen Lab | A new collection of recombinant inbred lines and new high-throughput fitness assays are published in G3

http://andersenlab.org/2015/03/13/recombinant-inbred-lines-g3-paper

Mar 13, 2015. A new collection of recombinant inbred lines and new high-throughput fitness assays are published in G3. A new collection of recombinant inbred lines and new high-throughput fitness assays are published in G3. A Powerful New Quantitative Genetics Platform, Combining. High-Throughput Fitness Assays with a Large Collection of Recombinant Strains. Crissman JR, Ghosh R, Bloom JS, Seidel HS, Gerke JP, Kruglyak L. Telomere paper accepted at. Mostafa accepts position at Madison!

andersenlab.org andersenlab.org

Andersen Lab | People

http://andersenlab.org/People

Fall 2015 Apple Picking. Erik Andersen Principal Investigator. Sarah Bier Undergraduate researcher. Shannon Brady Graduate Student. I am interested in the genotypic factors that contribute to drug sensitivity, especially in regards to chemotherapeutics. Daniel Cook Graduate Student. Http:/ www.danielecook.com. I am interested in using bioinformatics to elucidate how gene by gene, gene by environment, and conserved polygenic mechanisms give rise to complex traits. Mattlyn Cordova Undergraduate researcher.

andersenlab.org andersenlab.org

Andersen Lab | News Archive

http://andersenlab.org/archive

Telomere paper accepted at. Mostafa accepts position at Madison! Mostafa's review published in. Kristen is moving to the Broad! Erik receives IDP/Sherman Fairchild Cancer Innovation Award. Shannon receives travel award from Union Biometrica to present her work at TAGC! Dan's abstract selected for a talk at ICQG5. Telomere paper posted to BioRxiv. Erik receives research grant from Amazon Web Services. Erik receives Weinberg College Innovation Award to support CeNDR! Stefan receives CGM travel grant!

andersenlab.org andersenlab.org

Andersen Lab | Publications

http://andersenlab.org/Publications

Click on paper image to download PDF. The genetic basis of natural variation in. Citations : 0 ]. Prospects and challenges of CRISPR/Cas genome editing for the study and control of neglected vector-borne nematode diseases. Citations : 0 ]. Selection on a Subunit of the NURF Chromatin Remodeler Modifies Life History Traits in a Domesticated Strain of. Citations : 0 ]. Remarkably Divergent Regions Punctuate the Genome Assembly of the. Van 't Hof A. Citations : 12 ]. The laboratory domestication of. Plasmid...

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