EM-JOINT.RUTGERS.EDU

EmDep

Welcome to EmDep - Submit structures to EMDB. Integrated map deposition to EMDB and model coordinate deposition to PDB. Notice: EmDep is a retired service as of Sept. 30, 2016. Depositors may continue to access legacy EmDep submissions for read-only purposes. For new map depositions to EMDB, please use the wwPDB OneDep System. Quick guide to EmDep. Notes for first time users. Notes on EM Data Bank codes. Map coordinate model deposition guide. Last Modified: Wed Mar 07 13:16:20 EST 2018.

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Welcome to EmDep - Submit structures to EMDB. Integrated map deposition to EMDB and model coordinate deposition to PDB. Notice: EmDep is a retired service as of Sept. 30, 2016. Depositors may continue to access legacy EmDep submissions for read-only purposes. For new map depositions to EMDB, please use the wwPDB OneDep System. Quick guide to EmDep. Notes for first time users. Notes on EM Data Bank codes. Map coordinate model deposition guide. Last Modified: Wed Mar 07 13:16:20 EST 2018.

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EmDep | em-joint.rutgers.edu Reviews

https://em-joint.rutgers.edu

Welcome to EmDep - Submit structures to EMDB. Integrated map deposition to EMDB and model coordinate deposition to PDB. Notice: EmDep is a retired service as of Sept. 30, 2016. Depositors may continue to access legacy EmDep submissions for read-only purposes. For new map depositions to EMDB, please use the wwPDB OneDep System. Quick guide to EmDep. Notes for first time users. Notes on EM Data Bank codes. Map coordinate model deposition guide. Last Modified: Wed Mar 07 13:16:20 EST 2018.

INTERNAL PAGES

em-joint.rutgers.edu

1

EMDB policy on ID codes

http://em-joint.rutgers.edu/documentation/idcodeNotes.jsp

An EM Data Bank code will be issued only after:. All mandatory information has to be submitted. The depositor completes the submission process. The data passes minimum validation criteria. After the EM Data Bank code has been issued, submissions are annotated at the EM Data Bank processing site and the map is manually inspected. No entry will be released until the curated entry has been approved by the depositor.

2

EmDep Notes for First Time Users

http://em-joint.rutgers.edu/documentation/firstTime.jsp

EmDep notes for first time users. This is a description of how to submit data via EmDep to the EM Data Bank. 1 EmDep guides you through the process of completing your submission. Please also see our guide for map model deposition. How to begin your submission. The deposition can be based on a previous, fully or partly-completed, deposition. A new deposition can also be started from scratch. Every data item is partially verified as you add new information. EmDep for your information. In the Control panel.

3

A quick guide to EmDep

http://em-joint.rutgers.edu/documentation/quickGuide.jsp

The aim is to supply information in a way that changes all the red stars. And changes all the red arrows. What you will need. Valid map in MRC, CCP4, or Spider format. Optional data (allowable files):. Images in tif format in tif, jpeg or png format. Fourier shell correlation xml.

4

EmDep

http://em-joint.rutgers.edu/index2.jsp

Starting May 31st 2016, EmDep will no longer accept new EMDB submissions. Depositors with in-progress sessions will be able to access and complete their deposition sessions until September 30th 2016. If you started a submission during a previous session but did not complete it, you may resume from where you left off. Quick guide to EmDep. Notes for first time users. Notes on EM Data Bank codes. Map coordinate model deposition guide. Last Modified: Tue Aug 23 08:20:18 EDT 2016.

5

EmDep

http://em-joint.rutgers.edu/AutoDep?section=sampleDep&depCode=sample&depPassword=123

An error was detected in the reference number or password that you entered. Please try again. You have chosen to continue an existing, incomplete EmDep submission. Please enter the reference number for the entry that you wish to continue, along with the password that you entered when you began the submission. Enter the reference number of the submission that you want to continue. This is the number that you were given when you started the submission.

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em-joint.rutgers.edu

EmDep

Welcome to EmDep - Submit structures to EMDB. Integrated map deposition to EMDB and model coordinate deposition to PDB. Notice: EmDep is a retired service as of Sept. 30, 2016. Depositors may continue to access legacy EmDep submissions for read-only purposes. For new map depositions to EMDB, please use the wwPDB OneDep System. Quick guide to EmDep. Notes for first time users. Notes on EM Data Bank codes. Map coordinate model deposition guide. Last Modified: Wed Mar 07 13:16:20 EST 2018.

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