embnet.vital-it.ch

EMBnet node Switzerland

Bioinformatics tools, databases. Pretty printing of MSAs. MSA (Multiple Sequence Alignment). Comparison with coiled-coils database. Obtain sequence from database. Access to tools and DBs. Extract DNA segments between two primers. Alignment of 2 sequences. Optimal score of alignment. More resources: ExPASy: SIB Bioinformatics Resources Portal. Education, courses, documentation. SIB bioinformatics course portal. EMBnet course list archive. MD tutorial.tar.gz. BLAST - replacement: BLAST on ExPASy.

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EMBnet node Switzerland | embnet.vital-it.ch Reviews

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Bioinformatics tools, databases. Pretty printing of MSAs. MSA (Multiple Sequence Alignment). Comparison with coiled-coils database. Obtain sequence from database. Access to tools and DBs. Extract DNA segments between two primers. Alignment of 2 sequences. Optimal score of alignment. More resources: ExPASy: SIB Bioinformatics Resources Portal. Education, courses, documentation. SIB bioinformatics course portal. EMBnet course list archive. MD tutorial.tar.gz. BLAST - replacement: BLAST on ExPASy.

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1 embnet node switzerland

2 boxshade

3 clustalw

4 coils

5 fetch

6 ftp server

7 ipcr

8 lalign

9 prss

10 tmpred

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EMBnet node Switzerland | embnet.vital-it.ch Reviews

https://embnet.vital-it.ch

Bioinformatics tools, databases. Pretty printing of MSAs. MSA (Multiple Sequence Alignment). Comparison with coiled-coils database. Obtain sequence from database. Access to tools and DBs. Extract DNA segments between two primers. Alignment of 2 sequences. Optimal score of alignment. More resources: ExPASy: SIB Bioinformatics Resources Portal. Education, courses, documentation. SIB bioinformatics course portal. EMBnet course list archive. MD tutorial.tar.gz. BLAST - replacement: BLAST on ExPASy.

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embnet.vital-it.ch

1

FTP Repository

https://embnet.vital-it.ch/pages/database_ftp.html

Database and software distribution by FTP. Both major sequence databases and some secondary databases are available for downloading by anonymous FTP. They are physically distributed between Lausanne and Geneva. The sequence databases are distributed in native,. Formats, and are compressed on the fly using GNU gzip. Please use standard anonymous FTP if you want to retrieve uncompressed or Unix compressed files. The major databases are updated once a week. Supported formats and links. Back to the Top.

2

Home MD

https://embnet.vital-it.ch/MD_tutorial

3

EMBnet node Switzerland

https://embnet.vital-it.ch/pages/courses.html

A full list of SIB courses can be found on the Bioinformatics Course Portal of the SIB. Below, we list EMBnet courses from 1997 to 2010 that have not been migrated to the SIB educational portal. Please contact us. In case you need access to some of the old course material. 13 Sep - 17 Sep, 2010. Computational Analysis Of Ultra-high-throughput (uht) Sequencing Data. 25 Jan - 29 Jan, 2010. Introduction To Statistics For Biologists. 31 Aug - 04 Sep, 2009. Advanced Programming For Biologists. 28 Feb - 04 Mar...

4

COILS Server

https://embnet.vital-it.ch/software/COILS_form.html

Prediction of Coiled Coil Regions in Proteins. COILS is a program that compares a sequence to a database of known parallel two-stranded coiled-coils and derives a similarity score. By comparing this score to the distribution of scores in globular and coiled-coil proteins, the program then calculates the probability that the sequence will adopt a coiled-coil conformation. COILS was described in:. Lupas, A., Van Dyke, M., and Stock, J. (1991). Predicting Coiled Coils from Protein Sequences,. Back to the Top.

5

Fetch Server

https://embnet.vital-it.ch/software/fetch.html

ID or AC :. SIB Swiss Institute of Bioinformatics. Back to the Top.

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expasy.org

ExPASy: SIB Bioinformatics Resource Portal - Categories

http://www.expasy.org/proteomics

Query within a category:. Query a specific database:. Protein sequences and identification. Sequence sites, features and motifs. No support from the ExPASy Team). Bull; functional information on proteins • [more]. Bull; protein sequence database • [more]. Bull; protein-protein interactions • [more]. Bull; STRING is a database of known and predicted protein-protein interactions. The database contains information from numerous sources, including experimental repositories, computational prediction metho...

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embnet.vital-it.ch

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Bioinformatics tools, databases. Pretty printing of MSAs. MSA (Multiple Sequence Alignment). Comparison with coiled-coils database. Obtain sequence from database. Access to tools and DBs. Extract DNA segments between two primers. Alignment of 2 sequences. Optimal score of alignment. More resources: ExPASy: SIB Bioinformatics Resources Portal. Education, courses, documentation. SIB bioinformatics course portal. EMBnet course list archive. MD tutorial.tar.gz. BLAST - replacement: BLAST on ExPASy.

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