ensemblgenomes.org

Ensembl Genomes

Skip to main content. Ensembl Genomes: Extending Ensembl across the taxonomic space. New and updated plant genomes. This bumper release of Ensembl Plants. Brings eight new genomes, including cassava. In addition we have updated to latest and greatly improved (v3.0) sorghum. Genome assembly from JGI as well as updated assemblies for both soybean. Users can now view. Our comparative analysis of nearly 2 million genes across 53 plant species. All 12 drosophilid species in Ensembl Metazoa. In accordance with...

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Skip to main content. Ensembl Genomes: Extending Ensembl across the taxonomic space. New and updated plant genomes. This bumper release of Ensembl Plants. Brings eight new genomes, including cassava. In addition we have updated to latest and greatly improved (v3.0) sorghum. Genome assembly from JGI as well as updated assemblies for both soybean. Users can now view. Our comparative analysis of nearly 2 million genes across 53 plant species. All 12 drosophilid species in Ensembl Metazoa. In accordance with...

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Ensembl Genomes | ensemblgenomes.org Reviews

https://ensemblgenomes.org

Skip to main content. Ensembl Genomes: Extending Ensembl across the taxonomic space. New and updated plant genomes. This bumper release of Ensembl Plants. Brings eight new genomes, including cassava. In addition we have updated to latest and greatly improved (v3.0) sorghum. Genome assembly from JGI as well as updated assemblies for both soybean. Users can now view. Our comparative analysis of nearly 2 million genes across 53 plant species. All 12 drosophilid species in Ensembl Metazoa. In accordance with...

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neandertal.ensemblgenomes.org

The Neandertal Genome

Or AL032821.2.1.143563. The Neandertal Genome Browser. The Neandertal genome browser displays data for 1x coverage of the Neandertal genome derived from 3 Neandertal individuals from Vindija cave, Croatia. Data is available for each individual, as well as for a combined consensus of the three individuals. A more extensive description of the data is available here. Start Browsing NEANDERTAL data. Shows read-depth data alongside SNPs ). Human Genome Diversity Project. The Neandertal Genome Project.

rest.ensemblgenomes.org

Ensembl Rest API - Ensembl Genomes REST API Endpoints

About the Ensembl Project. Ensembl Genomes REST API Endpoints. Uses the given identifier to return the archived sequence. Retrieve the archived sequence for a set of identifiers. Retrieves gene family information by ID. Retrieves gene families to which a gene belongs. Retrieves gene families to which a gene belongs. Retrieves a gene tree dump for a gene tree stable identifier. Retrieves a gene tree that contains the stable identifier. Retrieves a gene tree containing the gene identified by a symbol.

INTERNAL PAGES

ensemblgenomes.org

1

RNAcentral sequences | Ensembl Genomes

http://ensemblgenomes.org/node/54517

Skip to main content. Following the launch of the new ncRNA sequence resource RNAcentral. Ensembl Genomes can now show alignments of sequences in RNAcentral against selected genomes. Turn on the "RNAcentral" track using the "Genes and transcripts" configuration menu, or try an example. Following the launch of the new ncRNA sequence resource RNAcentral. Thursday, November 20, 2014 - 13:55. Tuesday, December 15, 2015 - 11:57.

2

MySQL database access | Ensembl Genomes

http://ensemblgenomes.org/info/access/mysql

Skip to main content. Using your own data. Ensembl Genomes Perl API. Linking to Ensembl Genomes. Building an Ensembl Genomes mirror. Ensembl Genomes and the Ensembl software platform use the MySQL. Relational database management system to store data. MySQL databases are used by the web browser and REST service. And can be used with the Ensembl Perl API. Or directly with a MySQL client (see below). The schema used by the Ensembl platform are described in the Ensembl API documentation. MySQL servers are lo...

3

Ensembl Genomes Release 28 Intentions

http://ensemblgenomes.org/info/release/28

Skip to main content. Ensembl Genomes Release 28 Intentions. Released scheduled for 4th August 2015. Update to Ensembl 81 software. Removal of MySQL databases from release 18 from the public MySQL server. No significant updates planned for this release. Annotations based on PomBase Chadov53. No significant updates planned for this release. No significant updates planned for this release. No significant updates planned for this release.

4

Release notes from previous releases | Ensembl Genomes

http://ensemblgenomes.org/node/136

Skip to main content. Release notes from previous releases. Release notes from previous releases. 0) window.location = '/info/release-notes/' this.value;". Release 31 (March 2016). Release 30 (December 2015). Release 29 (October 2015). Release 28 (August 2015). Release 27 (June 2015). Release 26 (March 2015). Release 25 (January 2015). Release 24 (November 2014). Release 23 (August 2014). Release 22 (March 2014). Release 21 (December 2013). Release 20 (September 2013). Release 19 (July 2013).

5

Cookie policy | Ensembl Genomes

http://ensemblgenomes.org/info/about/cookies

Skip to main content. Triticeae Genomics for Sustainable Agriculture. Wheat Rust Genomic Improvement. Browser Genome Release Agreement. The Ensembl genome browser used by Ensembl Genomes uses cookies for several purposes. The cookie names and their uses are shown below:. Used to configure the width of the ensembl images. Remembers the best fit value for the ensembl image width. If set allows the asynchronous load of the ensembl web pages. If set allows the display of the hints on the ensembl pages.

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oge.gramene.org

Oryza longistaminata - Ensembl

http://oge.gramene.org/Oryza_longistaminata/Info/Index

AA genome type) is a wild rice, Perennial, tall (2 m or more), erect, and rhizomatous grass; ligule of lower leaves 15 mm, acute or 2-cleft; panicles open to intermediately open; spikelets 4.5-11.4 mm long and 2-3 mm wide, awned (2-5 cm long); anther 1.5-8.2 mm long. More information and statistics. More information and statistics. Display your data in Gramene OGE. What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs. More about this genebuild.

plants.ensembl.org

Oryza sativa Japonica Group - Ensembl Genomes

http://plants.ensembl.org/Oryza_sativa/Info/Index

Search Oryza sativa Japonica. Oryza sativa Japonica (IRGSP-1.0). Beta vulgaris subsp. vulgaris. Oryza sativa Japonica Group. Japonica (rice) is the staple food for 2.5 billion people. It is the grain with the second highest worldwide production after. In addition to its agronomic importance, rice is an important model species for monocot plants and cereals such as maize, wheat, barley and sorghum. More information and statistics. Genome assembly: IRGSP-1.0. More information and statistics. More about the...

plants.ensembl.org

Ensembl Genomes: Oryza sativa Japonica Group - Custom tracks - Personal Data

http://plants.ensembl.org/UserData/ManageData?time=1439362367

Track Hub Registry Search. Configurations for this page. Your data p You can rename your uploads and attached URLs by clicking on their current name in the Source column /p p a href=/info/website/upload/index.html class=popup Help on supported formats, display types, etc /a /p. Search for public track hubs. Add a custom track. Name for this data (optional):. Beta vulgaris subsp. vulgaris. Oryza brachyantha.v1.4b. O longistaminata v1.0. Oryza meridionalis v1.3. Paste in data or provide a file URL.

plants.ensembl.org

Ensembl Genomes: Oryza sativa Japonica Group - Login - Personal Data

http://plants.ensembl.org/Account/Favourites/Reset

Login to Ensembl Plants.

plants.ensembl.org

Ensembl Genomes: Oryza sativa Japonica Group - BLAST search

http://plants.ensembl.org/Tools/Blast?db=core

Beta vulgaris subsp. vulgaris. Ensembl Plants is produced in collaboration with Gramene. Ensembl Plants release 32 - August 2016 EMBL-EBI. EMBL-EBI Terms of use.

rest.ensemblgenomes.org

Ensembl Genomes REST API - GET xrefs/symbol/:species/:symbol

http://rest.ensemblgenomes.org/documentation/info/xref_external

About the Ensembl Genomes Project. Looks up an external symbol and returns all Ensembl objects linked to it. This can be a display name for a gene/transcript/translation, a synonym or an externally linked reference. If a gene's transcript is linked to the supplied symbol the service will return both gene and transcript (it supports transient links). Symbol or display name of a gene. Restrict the search to a database other than the default. Useful if you need to use a DB other than core. R = requests....

rest.ensemblgenomes.org

Ensembl Genomes REST API - GET family/member/id/:id

http://rest.ensemblgenomes.org/documentation/info/family_member_id

About the Ensembl Genomes Project. Retrieves gene families to which a gene belongs. Name of the callback subroutine to be returned by the requested JSONP response. Required ONLY when using JSONP as the serialisation method. Please see the user guide. The name of the compara database to use. Multiple comparas can exist on a server if you are accessing Ensembl Genomes data. Compara=protists'; my $response = $http- get($server.$ext, { headers = { 'Content-type' = 'application/json' } }); die Failed! Require...

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ensemblgenomes.org

Ensembl Genomes

Skip to main content. Ensembl Genomes: Extending Ensembl across the taxonomic space. New and updated plant genomes. This bumper release of Ensembl Plants. Brings eight new genomes, including cassava. In addition we have updated to latest and greatly improved (v3.0) sorghum. Genome assembly from JGI as well as updated assemblies for both soybean. Users can now view. Our comparative analysis of nearly 2 million genes across 53 plant species. All 12 drosophilid species in Ensembl Metazoa. In accordance with...

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