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Environments-EOL: March 2013
http://environments-eol.blogspot.com/2013_03_01_archive.html
A project aiming at processing the Encyclopedia of Life. S (EOL) Taxon pages to extract descriptions of their environmental context. Such input will subsequently employed to answer integrative large-scale biological questions (Funded by the EOL Rubenstein Fellows Program. Saturday, March 30, 2013. March 2013: paving the ground on several project aspects. March 2013 has largely been a preparatory month paving the ground for follow-up tasks. For the former scripts have been written employing the EOL API.
SEQenv - Sequence Environment
http://environments.hcmr.gr/seqenv.html
Annotating Sequences with Environments. A pipeline capable of annotating genetic sequences based on environment descriptive terms occurring within their records and/or in relevant literature. Once the relevant pieces of text for each matching sequence have been gathered they are being processed by a text mining module capable of identifying any Environment Ontology (EnvO) environment descriptive terms mentioned in them. A detailed SEQenv presentation is available here. By Dr Christopher Quince). Add stan...
Environments-EOL: July 2013
http://environments-eol.blogspot.com/2013_07_01_archive.html
A project aiming at processing the Encyclopedia of Life. S (EOL) Taxon pages to extract descriptions of their environmental context. Such input will subsequently employed to answer integrative large-scale biological questions (Funded by the EOL Rubenstein Fellows Program. Thursday, July 4, 2013. June 2013: The “dry-run” curation month. A gold standard corpus generation comprises steps such as: document collection/selection, manual document annotation, annotation result collection and statistical analysis.
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