epilog-tool.org

EpiLog | A computational tool for qualitative modelling of epithelium pattern formation

EpiLog (Epithelium Logical modelling) supports the definition, simulation and visualisation of qualitative models for epithelial pattern formation. It relies on a modelling framework where simple (one layer) epithelia are defined as multicellular systems involving intracellular regulatory models, cell-to-cell communication, as well as other environmental cues. Neighbouring relations are defined through appropriate functions, which qualitatively describe signalling ranges and integration.

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EpiLog | A computational tool for qualitative modelling of epithelium pattern formation | epilog-tool.org Reviews

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EpiLog (Epithelium Logical modelling) supports the definition, simulation and visualisation of qualitative models for epithelial pattern formation. It relies on a modelling framework where simple (one layer) epithelia are defined as multicellular systems involving intracellular regulatory models, cell-to-cell communication, as well as other environmental cues. Neighbouring relations are defined through appropriate functions, which qualitatively describe signalling ranges and integration.

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2 documentation

3 model repository

4 downloads

5 publications

6 companion tools

7 contacts

8 welcome to epilog

9 by dr radut

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EpiLog | A computational tool for qualitative modelling of epithelium pattern formation | epilog-tool.org Reviews

https://epilog-tool.org

EpiLog (Epithelium Logical modelling) supports the definition, simulation and visualisation of qualitative models for epithelial pattern formation. It relies on a modelling framework where simple (one layer) epithelia are defined as multicellular systems involving intracellular regulatory models, cell-to-cell communication, as well as other environmental cues. Neighbouring relations are defined through appropriate functions, which qualitatively describe signalling ranges and integration.

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epilog-tool.org

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Publications | EpiLog

http://www.epilog-tool.org/publications

How to cite EpiLog:. PL Varela, P.T. Monteiro, N.D. Mendes, A. Fauré, C. Chaouiya (2014). EpiLog, a computational tool for the logical modelling of epithelial pattern formation. Poster at 13th European Conference on Computational Biology (ECCB'14). Page by Dr. Radut.

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Companion Tools | EpiLog

http://www.epilog-tool.org/companion_tools

Raquo; Companion Tools. GINsim is a computer tool for the modeling and simulation of genetic regulatory networks, based on the discrete logical formalism. You can obtain more information at http:/ GINsim.org. LogicalModel is a tool for the manipulation of multi-valued logical models. It provides a set of core interfaces for the interoperability between different logical modelling tools (such as GINsim and EpiLog). You can get it at https:/ github.com/colomoto/logicalmodel. Page by Dr. Radut.

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EpiLog | A computational tool for qualitative modelling of epithelium pattern formation

http://www.epilog-tool.org/home

EpiLog (Epithelium Logical modelling) supports the definition, simulation and visualisation of qualitative models for epithelial pattern formation. It relies on a modelling framework where simple (one layer) epithelia are defined as multicellular systems involving intracellular regulatory models, cell-to-cell communication, as well as other environmental cues. Neighbouring relations are defined through appropriate functions, which qualitatively describe signalling ranges and integration.

4

| EpiLog

http://www.epilog-tool.org/models_repository

You don't have Javascript enabled. Hover for more information! But don't worry: you can still use this web site! You have two options:. In your browser and then refresh this page, for a much enhanced experience. Every time you want to update the selection. You don't have Javascript enabled. Hover for more information! But don't worry: you can still use this web site! You have two options:. In your browser and then refresh this page, for a much enhanced experience. Taxon - All terms. Process - All terms.

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Documentation | EpiLog

http://www.epilog-tool.org/documentation

Page by Dr. Radut.

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pedromonteiro.org

Pedro T. Monteiro

http://www.pedromonteiro.org/software.html

Pedro T. Monteiro. Work in progress in collaboration with Pedro L. Varela, Camila Veludo, Adrien Fauré and Claudine Chaouiya, at Instituto Gulbenkian de Ciência, Yamaguchi University and INESC-ID. GINsim 2.9.3. Work done in collaboration with Aurélien Naldi, Lionel Spinelli, Nuno Mendes, Denis Thieffry and Claudine Chaouiya, at Instituto Gulbenkian de Ciência, École Normale Supérieure, Université de Lausanne and INESC-ID. Work done at IGC, Oeiras. Http:/ www.phyloviz.net/wiki/. The PHYLOViZ DataStats mod...

pedromonteiro.org

Pedro T. Monteiro

http://www.pedromonteiro.org/index.html

Pedro T. Monteiro. With a FCT Investigator grant. Rua Alves Redol 9. P-1000-029 Lisboa, Portugal. 351) 21 3100 320. I belong to http:/ CoLoMoTo.org. Consortium for Logical Models and Tools), a consortium of research groups interested in logical modelling. The consortium works on the definition of standards for model representation and interchange (especially the SBML qual format), and on the comparison of methods, models and tools. In this context, I am currently involved on the development of:. Database...

ginsim.org

Companion Tools | GINsim

http://www.ginsim.org/companion_tools

Raquo; Companion Tools. EpiLog is a tool which makes use of LogicalModel to implement a cellular automata, defining a convenient framework for the qualitative modelling of epithelium pattern formation. You can obtain more information at http:/ epilog-tool.org. LogicalModel is a tool for the manipulation of multi-valued logical models. It provides a set of core interfaces for the interoperability between different logical modelling tools (such as GINsim and EpiLog).

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EpiLog | A computational tool for qualitative modelling of epithelium pattern formation

EpiLog (Epithelium Logical modelling) supports the definition, simulation and visualisation of qualitative models for epithelial pattern formation. It relies on a modelling framework where simple (one layer) epithelia are defined as multicellular systems involving intracellular regulatory models, cell-to-cell communication, as well as other environmental cues. Neighbouring relations are defined through appropriate functions, which qualitatively describe signalling ranges and integration.

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