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The EVEX database - Home

All interactions mentioned for the specific gene symbol in text. The results are not restricted to any specific organism. All interactions for genes that have these gene symbols as official name or synonym. The results are restricted to specific organisms and synonyms are taken into account. All interactions mentioned between these specific gene symbols in text. The results are not restricted to any specific organism. We recommend the latest versions of Google Chrome or Mozilla Firefox browsers for the b...

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All interactions mentioned for the specific gene symbol in text. The results are not restricted to any specific organism. All interactions for genes that have these gene symbols as official name or synonym. The results are restricted to specific organisms and synonyms are taken into account. All interactions mentioned between these specific gene symbols in text. The results are not restricted to any specific organism. We recommend the latest versions of Google Chrome or Mozilla Firefox browsers for the b...
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The EVEX database - Home | evexdb.org Reviews

https://evexdb.org

All interactions mentioned for the specific gene symbol in text. The results are not restricted to any specific organism. All interactions for genes that have these gene symbols as official name or synonym. The results are restricted to specific organisms and synonyms are taken into account. All interactions mentioned between these specific gene symbols in text. The results are not restricted to any specific organism. We recommend the latest versions of Google Chrome or Mozilla Firefox browsers for the b...

INTERNAL PAGES

evexdb.org evexdb.org
1

The EVEX database - API Documentation

http://www.evexdb.org/api/v001

Search history is empty. API v0.1 Documentation. Search GGP IDs with keyword or Entrez Gene / Uniprot / GenBank ID. The ID can be used for further searches. The other families support Entrez Gene IDs directly if the family='entrez' parameter is used. However, this function can be used to map the Entrez Gene ID into a homologous family which allows expanding the search to similar genes found from other organisms. Canonical, homologene, ensembl, egenomes, entrez}. Example query: /api/v001/search ggp/?

2

The EVEX database - Tutorial

http://www.evexdb.org/tutorial

Search history is empty. The EVEX website provides summarized information on various bio-molecular events, accounting for lexical variation of gene/protein symbols and dealing with synonymy and abbreviations. Both direct and indirect associations can be retrieved, and homology-based generalizations provide the opportunity to retrieve information on entire gene families. Finding direct and indirect associations. Retrieving sentences by event type. Finding direct and indirect associations. This enables a q...

3

The EVEX database - FAQ

http://www.evexdb.org/faq

Search history is empty. How are gene/protein names identified in text? How are gene/protein names normalized? Which kind of interactions are extracted by EVEX? How are interactions extracted from text? What is the canonical generalization? What are the HomoloGene and Ensembl (Genomes) generalizations? Is the data in EVEX up-to-date? How should EVEX be cited? Can we download or export the EVEX data? How are gene/protein names identified in text? How are gene/protein names normalized? This machine learnin...

4

The EVEX database - About

http://www.evexdb.org/about

Search history is empty. EVEX is a text mining resource built on top of PubMed abstracts and PubMed Central full text articles. It contains over 40 million bio-molecular events among more than 76 million automatically extracted gene/protein name mentions. The text mining data further has been enriched with gene identifiers and gene families from Ensembl and HomoloGene, providing homology-based event generalizations. EVEX presents both direct and indirect associations between genes and protein...EVEX is p...

5

The EVEX database - CyEVEX Plugin

http://www.evexdb.org/cyevex

Search history is empty. CyEVEX is a Cytoscape plugin designed for retrieving gene interactions from EVEX. The plugin enables searching of pairwise interactions for a set of genes or expanding a network with the interaction partners of a given gene. CyEVEX is distributed as a Java archive which can be downloaded from here: CyEVEX v0.1.1.jar. Searching edges for existing nodes. Linking out to EVEX website. Searching with gene families. Refined interaction type, e.g. regulation of expression. Refined polar...

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bionlp.utu.fi bionlp.utu.fi

Finnish Propbank | Turku BioNLP Group

http://bionlp.utu.fi/finnish-propbank.html

For download and PropBank browser, see the project page on GitHub. The project is funded by the Emil Aaltonen Foundation.

bionlp.utu.fi bionlp.utu.fi

Projects and software | Turku BioNLP Group

http://bionlp.utu.fi/projects.html

This page provides links to further online material related to the various projects in which the group members are involved. In particular, we provide here the datasets and software released by the group. Conversion of five PPI corpora into a shared format. RLScore: a software package containing general purpose machine learning methods for classification, regression and ranking.

bionlp.utu.fi bionlp.utu.fi

Publications | Turku BioNLP Group

http://bionlp.utu.fi/publications.html

Number of matching entries: 0. Journal / Proceedings / Book. Mehryary, F. Kaewphan, S. Hakala, K. and Ginter, F. Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification. Journal of Biomedical Semantics. Vol 7 (1) , pp. 1-13. Nivre, J. de Marneffe, M.-C. Ginter, F. Goldberg, Y. Hajič, J. Manning, C.D. McDonald, R. Petrov, S. Pyysalo, S. Silveira, N. Tsarfaty, R. and Zeman, D. Inproceedings{nivre2016udv1, author = {Joakim Nivre an...

bionlp.utu.fi bionlp.utu.fi

Turku Clinical TreeBank and PropBank | Turku BioNLP Group

http://bionlp.utu.fi/clinicalcorpus.html

Turku Clinical TreeBank and PropBank. We have developed a dependency-annotated treebank of Finnish Intensive Care Nursing Narratives. The treebank is annotated in a minor revision of the Stanford dependency scheme (de Marneffe et al. [ 1. The corpus text is automatically POS-tagged using Lingsoft TWOL and Lingsoft CG morphological analyzer and constraint grammar parser by Lingsoft, Inc. Adapted for clinical language. And is described, for example, in this paper. By Suominen et al. And contains no private...

bionlp.utu.fi bionlp.utu.fi

Turku BioNLP Group | Turku BioNLP Group

http://bionlp.utu.fi/index.html

bionlp.utu.fi bionlp.utu.fi

RLScore | Turku BioNLP Group

http://bionlp.utu.fi/rlscore.html

RLScore is a Regularized Least-Squares (RLS) based machine learning package. It contains implementations of the RLS and RankRLS learners allowing the optimization of performance measures for the tasks of regression, ranking and classification. Implementations of efficient cross-validation algorithms are integrated to the package, combined together with functionality for fast parallel learning of multiple outputs. Sparse approximations suitable for large-scale learning, based on using the subset of regres...

bionlp.utu.fi bionlp.utu.fi

BioInfer | Turku BioNLP Group

http://bionlp.utu.fi/bioinfer.html

We have created the BioInfer corpus to support the development of IE systems in the biomedical domain. The project has its own webpage. Where you can find the corpus as well as the software relevant to it.

bionlp.utu.fi bionlp.utu.fi

Finnish Internet Parsebank | Turku BioNLP Group

http://bionlp.utu.fi/finnish-internet-parsebank.html

The Finnish Internet Parsebank project. The Finnish Internet Parsebank is a joint project with the School of languages and Translation studies. It aims at producing a mass-scale corpus of Internet Finnish by using automatic syntactic analysis and document classification. The project has three aims:. The creation of a language resource with automatic morphological and syntactic analyses. The classification of the entire Parsebank to coherent subcorpora. The creation of an online user interface. See also t...

bionlp.utu.fi bionlp.utu.fi

People | Turku BioNLP Group

http://bionlp.utu.fi/people.html

Veronika Laippala (Dept. of French Studies). Aki Kyröläinen. Researchers and PhD students.

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The owner of evexchange.com. Is offering it for sale for an asking price of 2900 EUR! This webpage was generated by the domain owner using Sedo Domain Parking. Disclaimer: Sedo maintains no relationship with third party advertisers. Reference to any specific service or trade mark is not controlled by Sedo nor does it constitute or imply its association, endorsement or recommendation.

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The EVEX database - Home

All interactions mentioned for the specific gene symbol in text. The results are not restricted to any specific organism. All interactions for genes that have these gene symbols as official name or synonym. The results are restricted to specific organisms and synonyms are taken into account. All interactions mentioned between these specific gene symbols in text. The results are not restricted to any specific organism. We recommend the latest versions of Google Chrome or Mozilla Firefox browsers for the b...

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EV.EX DESIGN - Home

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