evoinformatics.eu
evoinformaticsThe website of Michael Matschiner. The software tools Tandem, CladeAge, Fitchi and F4 can be downloaded from this site.
http://www.evoinformatics.eu/
The website of Michael Matschiner. The software tools Tandem, CladeAge, Fitchi and F4 can be downloaded from this site.
http://www.evoinformatics.eu/
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evoinformatics | evoinformatics.eu Reviews
https://evoinformatics.eu
The website of Michael Matschiner. The software tools Tandem, CladeAge, Fitchi and F4 can be downloaded from this site.
evoinformatics.eu
evoinformatics | CladeAge
http://www.evoinformatics.eu/cladeage.htm
Bayesian phylogenetic estimation of clade ages based on probabilities of fossil sampling. CladeAge is an add-on package for the Bayesian software BEAST 2. Which allows time calibration of phylogenetic trees based on probability densities for clade ages, calculated from a model of constant diversification and fossil sampling. And the same is the case for the estimation of diversification rates (e.g. MEDUSA. How to cite CladeAge. Advance access, doi:10.1093/sysbio/syw076. Read the paper describing CladeAge.
evoinformatics | Fitchi
http://www.evoinformatics.eu/fitchi.htm
Haplotype genealogy graphs based on Fitch distances. Fitchi is a python script that produces haplotype genealogy graphs from alignment files in Nexus format, along with summary statistics. Hence the name of this script. Details on the transformation of a bifucating phylogenetic tree into a haplotype genealogy are given in Salzburger et al. (2011). Unfortunately, Fitchi is unlikely to run on your machine right out of the box, but may require a few additional installations. The below instructions shoul...
evoinformatics | Tandem2
http://www.evoinformatics.eu/tandem2.htm
Automated microsatellite allele binning for population genetics workflows. Tandem2 runs natively on 64 bit Mac OSX. Earlier versions of Tandem, including Ruby source code that runs on Mac, Windows, and Windows are available at www.evolution.unibas.ch/salzburger/software.htm. If you'ld like to see other export formats or features implemented in Tandem2, of if you have trouble running Tandem2,. However, all microsatellite analysis software expect integer allele sizes. And exhaustively optimizes parameters ...
evoinformatics | Michael Matschiner
http://www.evoinformatics.eu/michaelmatschiner.htm
Evolutionary biologist / Software developer / Outdoor enthusiast. Centre for Ecological and Evolutionary Synthesis. Diversification / Adaptive radiation / Phylogenomics / Introgression. My research investigates both micro- and macroevolutionary processes that drive species diversification, mostly using the adaptive radiations of Antarctic ice fishes or African cichlid fishes as model systems. To infer time-lines of diversification, I use genomic data sets, and I have developed the CladeAge. Malmstrø...
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Evolutionary Informatics Working Group
From Evolutionary Informatics Working Group. Evolutionary Informatics (EvoInfo) Working Group. In the fall of 2006, NESCent funded a working group with a mandate to promote interoperability, based on a proposal by Rutger Vos and Arlin Stoltzfus, submitted with the support of over a dozen scientific experts in phylogenetic software development (see Participants. Evolutionary Informatics (EvoInfo) Working Group. Evolution, informatics and comparative biology. Which focused on organizing. To address these i...
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The Evolutionary Informatics Lab - EvoInfo.org
Honor of mathematics requires us to come up with a mathematical theory of evolution and either prove Darwin was wrong or right. Gregory Chaitin. Introduction To Evolutionary Informatics. N acessable and easy to understand introduction to evolutionary informatics. Science has made great strides in modeling space, time, mass and energy. Yet little attention has been paid to the precise representation of the information ubiquitous in nature. Introduction to Evolutionary Informatics. Volutionary informatics ...
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