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The FAIRDOMHub

Is built upon the SEEK. Software suite, which is an open source web platform for sharing scientific research assets, processes and outcomes. For more information about SEEK please visit http:/ seek4science.org. Is an initiative to develop a community, and establish an internationally sustained Data and Model Management service to the European Systems Biology community. FAIRDOM is a joint action of ERA-Net EraSysAPP. And European Research Infrastructure ISBE. If you are interested in using FAIRDOMHub.

http://www.fairdomhub.org/

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The FAIRDOMHub | fairdomhub.org Reviews
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Is built upon the SEEK. Software suite, which is an open source web platform for sharing scientific research assets, processes and outcomes. For more information about SEEK please visit http:/ seek4science.org. Is an initiative to develop a community, and establish an internationally sustained Data and Model Management service to the European Systems Biology community. FAIRDOM is a joint action of ERA-Net EraSysAPP. And European Research Infrastructure ISBE. If you are interested in using FAIRDOMHub.
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The FAIRDOMHub | fairdomhub.org Reviews

https://fairdomhub.org

Is built upon the SEEK. Software suite, which is an open source web platform for sharing scientific research assets, processes and outcomes. For more information about SEEK please visit http:/ seek4science.org. Is an initiative to develop a community, and establish an internationally sustained Data and Model Management service to the European Systems Biology community. FAIRDOM is a joint action of ERA-Net EraSysAPP. And European Research Infrastructure ISBE. If you are interested in using FAIRDOMHub.

INTERNAL PAGES

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1

The FAIRDOMHub Assays

https://www.fairdomhub.org/assays

Assays visible to you, out of a total of 367. Analysis of liver proteome of Atlantic cod exposed to methylmercury. Systems toxicology of Atlantic cod. Toxicogenomics in Atlantic cod. Effects of methylmercury in Atlantic cod. Created: 5th Feb 2017 at 22:49, Last updated: 5th Feb 2017 at 22:49. Liver transcriptome analysis of Atlantic cod exposed to methylmercury. Systems toxicology of Atlantic cod. Toxicogenomics in Atlantic cod. Effects of methylmercury in Atlantic cod. Created: 5th Feb 2017 at 22:43.

2

The FAIRDOMHub People

https://www.fairdomhub.org/people

Team leader "Quantitative Microbial Phenotyping". Institute of Bio- and Geosciences, IBG-1: Biotechnology. 52425 Jülich, Germany. Delft University of Technology (DUT). Coupling metabolome and environome. Assistant professor working on industrial and environmental microorganisms. PhD student @ "Quantitative Microbial Phenotyping". Institute of Bio- and Geosciences, IBG-1: Biotechnology. 52425 Jülich, Germany. Biochemistry and protein analysis. ICYSB 2015 - International Practical Course in Systems Biology.

3

The FAIRDOMHub Data files

https://www.fairdomhub.org/data_files/1584

Source data for Figure 2G mCFU-E. Source data for Figure 2G mCFU-E. See Figure 2 caption. Https:/ www.fairdomhub.org/data files/1584? Creative Commons Attribution 4.0. 11th Jan 2017 at 15:50. 11th Jan 2017 at 15:50. 10th Mar 2017 at 11:04. Whole body modelling of glucose metabolism in malaria patients. The Molecular Systems Biology project holds information for reproducing simulation figures in the journal. This can include experimental data files, model files and manuscript information. Mathematical mod...

4

The FAIRDOMHub Publications

https://www.fairdomhub.org/publications

Division of labor by dual feedback regulators controls JAK2/STAT5 signaling over broad ligand range. Bachmann J.,Raue A.,Bohm M. E.,Kreutz C.,Kaschek D.,Busch H.,Gretz N.,Lehmann W. D.,Timmer J.,Klingmuller U. Molecular Systems Biology 7(1) : 516. Created: 3rd Mar 2016 at 10:48, Last updated: 10th Mar 2017 at 13:11. Engineering of Corynebacterium glutamicum for minimized carbon loss during utilization of D-xylose containing substrates. Created: 1st Mar 2017 at 10:18. Created: 1st Mar 2017 at 10:16. Sucro...

5

The FAIRDOMHub Projects

https://www.fairdomhub.org/projects

D-xylose is a major component of lignocellulose and is after D-glucose the most abundant monosaccharide on earth. However, D-xylose cannot be naturally utilised by several industrially relevant microorganisms. On the way to a strong bio-based economy in Europe, this widely available feedstock has to be made accessible for the sustainable microbial synthesis of value-added chemical building blocks to be used in a broad range of applications. The project aims at engineering Corynebacterium glut...Salmon fa...

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SEEK 1.0 Released !

http://www.esciencelab.org.uk/announcements/release/2015/12/17/seek-1.0-release

SEEK 1.0 Released! We are pleased to announce the release of SEEK version 1.0. This version of SEEK forms the base version for our new FAIRDOMHub. Service, about which we will be releasing more details in the new year. Included in this version are some key new features:. A refinement of the administrative roles. Publishing of entire Investigations as Snapshots - frozen in time as Research Objects. For more details about this release, please visit http:/ fair-dom.org/news-seek-1.0.

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Rightfield | FAIRDOM

http://fair-dom.org/rightfield

About arrow drop down. Platform arrow drop down. Partners arrow drop down. Contribute arrow drop down. Submit Knowledge Hub Resources. Latest arrow drop down. Virtual Liver Network (VLN). Submit Knowledge Hub Resources. Rightfield was used extensively to generate templates. For scientists in the SysMO consortium. Rightfield can be downloaded. And used directly as an application for Windows, OSX and Linux. RightField is open source, and is released under the BSD licence.

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Events | FAIRDOM

http://fair-dom.org/events

About arrow drop down. Platform arrow drop down. Partners arrow drop down. Contribute arrow drop down. Submit Knowledge Hub Resources. Latest arrow drop down. Virtual Liver Network (VLN). Submit Knowledge Hub Resources. Saturday, September 3rd, 2016 - Wednesday, September 7th, 2016. 9:00 am - 5:00 pm. 15th European Conference on Computational Biology. World Forum Convention Centre, The Hague, Netherlands, The Hague. Monday, September 12th, 2016 - Friday, September 23rd, 2016. 9:00 pm - 5:00 pm.

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JWS Online | FAIRDOM

http://fair-dom.org/jws-online

About arrow drop down. Platform arrow drop down. Partners arrow drop down. Contribute arrow drop down. Submit Knowledge Hub Resources. Latest arrow drop down. Virtual Liver Network (VLN). Submit Knowledge Hub Resources. Is a systems biology tool for the construction, modification and simulation of kinetic models and for the storage of curated models. The software integrates with BioModels database. German Federal Ministry of Education and Research.

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Samples Club | FAIRDOM

http://fair-dom.org/samples

About arrow drop down. Platform arrow drop down. Partners arrow drop down. Contribute arrow drop down. Submit Knowledge Hub Resources. Latest arrow drop down. Virtual Liver Network (VLN). Submit Knowledge Hub Resources. If you want to know more about Samples Club, or you want to join you can contact us. And we will get back to you. There are currently no scheduled meetings. University of Manchester, 21st to 22nd March 2016:. University of Manchester, 17th and 19th June 2015:. ETH Zürich / FAIRDOM. Biosam...

fair-dom.org fair-dom.org

openBIS | FAIRDOM

http://fair-dom.org/openbis

About arrow drop down. Platform arrow drop down. Partners arrow drop down. Contribute arrow drop down. Submit Knowledge Hub Resources. Latest arrow drop down. Virtual Liver Network (VLN). Submit Knowledge Hub Resources. OpenBIS is currently being used by several SystemsX.ch. For downloading the current servers (Application server and Datastore server) please click here. The source code can be found in the CISD Source Code Repository. Further information can be found on the website.

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Partners | FAIRDOM

http://fair-dom.org/friends

About arrow drop down. Platform arrow drop down. Partners arrow drop down. Contribute arrow drop down. Submit Knowledge Hub Resources. Latest arrow drop down. Virtual Liver Network (VLN). Submit Knowledge Hub Resources. German Federal Ministry of Education and Research.

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EMSL | FAIRDOM

http://fair-dom.org/EMSL

About arrow drop down. Platform arrow drop down. Partners arrow drop down. Contribute arrow drop down. Submit Knowledge Hub Resources. Latest arrow drop down. Virtual Liver Network (VLN). Submit Knowledge Hub Resources. Is a scientific user facility at Pacific Northwest National Laboratory that is funded and sponsored by the United States Department of Energy’s Office of Biological and Environmental Research. Strategic research agenda – Systems Biology in Europe 2016. Did you miss our fourth webinar?

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ERASysAPP | FAIRDOM

http://fair-dom.org/erasysapp

About arrow drop down. Platform arrow drop down. Partners arrow drop down. Contribute arrow drop down. Submit Knowledge Hub Resources. Latest arrow drop down. Virtual Liver Network (VLN). Submit Knowledge Hub Resources. The main objective of the ERANET proposal Systems Biology Applications – ERASysAPP. FAIRDOM will be supporting ERASysAPP projects in the management of research assets. The data sharing policy associated with this work is available here. Supported Projects in First Call. DrMark Dopson, Lin...

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Community Standards | FAIRDOM

http://fair-dom.org/community

About arrow drop down. Platform arrow drop down. Partners arrow drop down. Contribute arrow drop down. Submit Knowledge Hub Resources. Latest arrow drop down. Virtual Liver Network (VLN). Submit Knowledge Hub Resources. What are Community Standards? Although there are some relevant top-down standards developed by the International Standards Organisation (ISO). Simulating models (e.g. SBRML. Visualising models (e.g. SBGN. Structuring data (e.g MzTAB. A recent FAIRDOM survey of standard usage. Make a wide ...

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The FAIRDOMHub

Is built upon the SEEK. Software suite, which is an open source web platform for sharing scientific research assets, processes and outcomes. For more information about SEEK please visit http:/ seek4science.org. Is an initiative to develop a community, and establish an internationally sustained Data and Model Management service to the European Systems Biology community. FAIRDOM is a joint action of ERA-Net EraSysAPP. And European Research Infrastructure ISBE. If you are interested in using FAIRDOMHub.

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