fish.phenoscape.org

Phenoscape Knowledgebase

The Knowledgebase currently contains 565,158. Phenotype statements about 2,527. Taxa, sourced from 57. As well as 38,189. Phenotype statements about 4,727. Genes, retrieved from ZFIN. The data were last loaded into the Knowledgebase on 2013-01-26. The Phenoscape Knowledgebase is currently in beta testing. We would greatly value your feedback. As we continue its development. You can use the tools below to explore the Knowledgebase in different ways. Click the help. Icons below to learn more about each tool.

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Phenoscape Knowledgebase | fish.phenoscape.org Reviews

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The Knowledgebase currently contains 565,158. Phenotype statements about 2,527. Taxa, sourced from 57. As well as 38,189. Phenotype statements about 4,727. Genes, retrieved from ZFIN. The data were last loaded into the Knowledgebase on 2013-01-26. The Phenoscape Knowledgebase is currently in beta testing. We would greatly value your feedback. As we continue its development. You can use the tools below to explore the Knowledgebase in different ways. Click the help. Icons below to learn more about each tool.

<META> KEYWORDS

1 publications

2 feedback

3 workspace

4 acknowledgments

5 phenoscape news

6 phenotypes

7 taxa

8 anatomical entities

9 phenotypic qualities

10 query data

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publications,feedback,workspace,acknowledgments,phenoscape news,phenotypes,taxa,anatomical entities,phenotypic qualities,query data,genes,comparative publications,visualize data,phenotypic profile tree,phenotype variation tree

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Phenoscape Knowledgebase | fish.phenoscape.org Reviews

https://fish.phenoscape.org

The Knowledgebase currently contains 565,158. Phenotype statements about 2,527. Taxa, sourced from 57. As well as 38,189. Phenotype statements about 4,727. Genes, retrieved from ZFIN. The data were last loaded into the Knowledgebase on 2013-01-26. The Phenoscape Knowledgebase is currently in beta testing. We would greatly value your feedback. As we continue its development. You can use the tools below to explore the Knowledgebase in different ways. Click the help. Icons below to learn more about each tool.

INTERNAL PAGES

fish.phenoscape.org

1

Visualize phenotypic profile tree « Phenoscape

http://fish.phenoscape.org/phenotypes/profile_tree

Enter entity terms (e.g. basihyal bone), phenotypic qualities (e.g. shape, size), taxonomic names (e.g. Ictaluridae), gene names or symbols (e.g. cadherin 6, cdh6), or publications. Visualize phenotypic profile tree. Begin typing to choose a term from the autocomplete menu. Taxon color indicates the greatest level of match of specified phenotype(s) found within a species in the clade. No phenotypes entered yet. Add a phenotype to the profile:. Greatest level of match.

2

Browse phenotypes « Phenoscape

http://fish.phenoscape.org/phenotypes/facets

Enter entity terms (e.g. basihyal bone), phenotypic qualities (e.g. shape, size), taxonomic names (e.g. Ictaluridae), gene names or symbols (e.g. cadherin 6, cdh6), or publications. Phenotypes involving any quality. With any related entity. View these results as a phenotypes query. Begin typing to choose a term from the autocomplete menu. Begin typing to choose a term from the autocomplete menu. Begin typing to choose a term from the autocomplete menu. Portion of organism substance. Of cardiac muscle cell.

3

Query phenotypes « Phenoscape

http://fish.phenoscape.org/phenotypes

Enter entity terms (e.g. basihyal bone), phenotypic qualities (e.g. shape, size), taxonomic names (e.g. Ictaluridae), gene names or symbols (e.g. cadherin 6, cdh6), or publications. Phenotype annotations to taxa. Phenotype annotations to genes. Begin typing to choose a term from the autocomplete menu. Begin typing to choose a term from the autocomplete menu. Begin typing to choose a term from the autocomplete menu. Begin typing to choose a term from the autocomplete menu. Results 1 - 20 of 19475. Lacks p...

4

Teleostei « Browse taxa « Phenoscape

http://fish.phenoscape.org/term/taxon/TTO:201

Enter entity terms (e.g. basihyal bone), phenotypic qualities (e.g. shape, size), taxonomic names (e.g. Ictaluridae), gene names or symbols (e.g. cadherin 6, cdh6), or publications. Source: Teleost Taxonomy Ontology. Data in the Knowledgebase. Browse phenotypes (faceted view). Phenotype annotations to taxa. View in NCBI taxonomy. The Phenoscape project is funded by NSF grants DBI-1062404 and DBI-1062542, and supported by the National Evolutionary Synthesis Center (NESCent), NSF #EF-0905606.

5

WebHints - phenoscape

http://fish.phenoscape.org/hints/WebHints

This page is an easily editable source for help popups in the Phenoscape web UI. Each entry below should be contained in a block element (DIV) with a mnemonic ID. NOTE that there may be other wiki pages that also appear in the Phenoscape web UI, e.g. http:/ phenoscape.org/wiki/Knowledgebase:File formats (for data downloads). Phenotypes are a combination of an Entity. Such as an anatomical structure, with a Quality. Find a Specific Term. Query Phenotype Annotations To Taxa. Associated with particular taxa.

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phenoscape.org

Software - phenoscape

http://phenoscape.org/wiki/Software

This page provides a overview of our software development activities. Phenoscape supports open development processes and collaboration. All source code we create is available from open source repositories such as Github. And we work with existing open-source projects whenever possible. Repositories no longer being used/maintained. The live KB can be accessed at http:/ kb.phenoscape.org/. For more information on the Phenoscape Knowledgebase see these wiki pages:. Written in Scala using OWL API and Jena.

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The Knowledgebase currently contains 565,158. Phenotype statements about 2,527. Taxa, sourced from 57. As well as 38,189. Phenotype statements about 4,727. Genes, retrieved from ZFIN. The data were last loaded into the Knowledgebase on 2013-01-26. The Phenoscape Knowledgebase is currently in beta testing. We would greatly value your feedback. As we continue its development. You can use the tools below to explore the Knowledgebase in different ways. Click the help. Icons below to learn more about each tool.

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