flexpepdock.furmanlab.cs.huji.ac.il flexpepdock.furmanlab.cs.huji.ac.il

flexpepdock.furmanlab.cs.huji.ac.il

FlexPepDock Server

Wednesday, 15th June 2016, 08:50 GMT) Due to database issues, new job submissions are currently not allowed. We will fix this in the next two hours. FlexPepDock is a high-resolution peptide-protein docking (refinement) protocol for the modeling of peptide-protein complexes, implemented in the Rosetta framework. For more details see the "Overview". And "Usage and FAQ". Advanced Options (click to toggle). Insert a reference PDB Learn more. Insert a constraint file Learn more. Customize number of structures.

http://flexpepdock.furmanlab.cs.huji.ac.il/

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FlexPepDock Server | flexpepdock.furmanlab.cs.huji.ac.il Reviews
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Wednesday, 15th June 2016, 08:50 GMT) Due to database issues, new job submissions are currently not allowed. We will fix this in the next two hours. FlexPepDock is a high-resolution peptide-protein docking (refinement) protocol for the modeling of peptide-protein complexes, implemented in the Rosetta framework. For more details see the Overview. And Usage and FAQ. Advanced Options (click to toggle). Insert a reference PDB Learn more. Insert a constraint file Learn more. Customize number of structures.
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1 notice
2 overview
3 queue
4 citing
5 usage and faq
6 demo
7 furman lab
8 rosetta
9 sections
10 input pdb file
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notice,overview,queue,citing,usage and faq,demo,furman lab,rosetta,sections,input pdb file,your e mail,optional but recommended,share this job,name this job,score,hbond sc,rama,i sc,pep sc,rmsbb if,fa atr,fa pair,pep sc noref,rmsall if,fa rep,fa dun,rmsbb
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FlexPepDock Server | flexpepdock.furmanlab.cs.huji.ac.il Reviews

https://flexpepdock.furmanlab.cs.huji.ac.il

Wednesday, 15th June 2016, 08:50 GMT) Due to database issues, new job submissions are currently not allowed. We will fix this in the next two hours. FlexPepDock is a high-resolution peptide-protein docking (refinement) protocol for the modeling of peptide-protein complexes, implemented in the Rosetta framework. For more details see the "Overview". And "Usage and FAQ". Advanced Options (click to toggle). Insert a reference PDB Learn more. Insert a constraint file Learn more. Customize number of structures.

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flexpepdock.furmanlab.cs.huji.ac.il flexpepdock.furmanlab.cs.huji.ac.il
1

FlexPepDock Server

http://flexpepdock.furmanlab.cs.huji.ac.il/overview.php

Wednesday, 15th June 2016, 08:50 GMT) Due to database issues, new job submissions are currently not allowed. We will fix this in the next two hours. Rosetta FlexPepDock is a high-resolution peptide-protein docking protocol, implemented within the Rosetta framework, that is able to refine a coarse starting structure of a peptide-protein complex, to a near-native model of the interaction. Figure 1. Outline of the FlexPepDock Protocol. Credit: Raveh. Fore more results and details, read Raveh. E-mail address...

2

FlexPepDock Server

http://flexpepdock.furmanlab.cs.huji.ac.il/queue.php

Wednesday, 15th June 2016, 08:50 GMT) Due to database issues, new job submissions are currently not allowed. We will fix this in the next two hours. 2010 (C) The Hebrew University of Jerusalem. E-mail addresses submitted to FlexPepDock's web server are only used for tracking user's usage and returning analysis results. We may also contact you via email should any problem arise with you submission. Be sure that email addresses are not used for any other purpose and are not passed to third parties.

3

FlexPepDock Server

http://flexpepdock.furmanlab.cs.huji.ac.il/cite.php

Wednesday, 15th June 2016, 08:50 GMT) Due to database issues, new job submissions are currently not allowed. We will fix this in the next two hours. Please cite the following when referring to results from our server:. London N, Raveh B, Cohen E, Fathi G, Schueler-Furman O. (2011). Rosetta FlexPepDock web server - high resolution modeling of peptide-protein interactions. Nucleic Acids Research 2011. Raveh B, London N, Schueler-Furman O. (2010). 2010 (C) The Hebrew University of Jerusalem.

4

FlexPepDock Server

http://flexpepdock.furmanlab.cs.huji.ac.il/demo/index.php

Wednesday, 15th June 2016, 08:50 GMT) Due to database issues, new job submissions are currently not allowed. We will fix this in the next two hours. Top 10 models (Zip file). RmsBB and scores for top 10 models (TXT file). 2010 (C) The Hebrew University of Jerusalem. All data submitted to FlexPepDock's web server and it's analysis results is publicly accessible, hence we cannot guarantee confidentiality.

5

FlexPepDock Server

http://flexpepdock.furmanlab.cs.huji.ac.il/index.php

Wednesday, 15th June 2016, 08:50 GMT) Due to database issues, new job submissions are currently not allowed. We will fix this in the next two hours. FlexPepDock is a high-resolution peptide-protein docking (refinement) protocol for the modeling of peptide-protein complexes, implemented in the Rosetta framework. For more details see the "Overview". And "Usage and FAQ". Advanced Options (click to toggle). Insert a reference PDB Learn more. Insert a constraint file Learn more. Customize number of structures.

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rosettacommons.org rosettacommons.org

Servers | RosettaCommons

https://www.rosettacommons.org/software/servers

The hub for Rosetta modeling software. The RosettaCommons offers many web-interface servers for the use of Rosetta, which usually allow small academic jobs for free or paid use for large or commercial projects Rosetta@cloud. Read more about Rosetta servers in the RosettaDesign blog. The Rosetta Online Server the Includes Everyone hosts several servers for combined computer power as a free resource for academic users. Protein Structure Prediction Server. Protein Sequence Design Server. Rosetta@cloud is a ...

rosettadesigngroup.com rosettadesigngroup.com

Macromolecular Modeling Blog

http://rosettadesigngroup.com/blog

Trading tips and news on modeling proteins, DNA, RNA, small molecules, folding, docking, design…. Support computational protein design by voting Arzeda for the Sofinnova Start-Up Award! Support computational protein design for green chemistry by voting for Arzeda before 10 July 2015 4:00pm CET at: bit.ly/renchem. Has been nominated for the Sofinnova Renewable Chemistry Start-up Award. Written by Xavier Ambroggio in: Awards. Protein-peptide interactions play a key role in cell functions. Their structu...

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Wednesday, 15th June 2016, 08:50 GMT) Due to database issues, new job submissions are currently not allowed. We will fix this in the next two hours. FlexPepDock is a high-resolution peptide-protein docking (refinement) protocol for the modeling of peptide-protein complexes, implemented in the Rosetta framework. For more details see the "Overview". And "Usage and FAQ". Advanced Options (click to toggle). Insert a reference PDB Learn more. Insert a constraint file Learn more. Customize number of structures.

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