forum.cellprofiler.org

cellprofiler.org

CellProfiler

http://cellprofiler.org/outreach.shtml

Outreach and teaching materials. The CellProfiler team has developed several educational resources to introduce people to the joy of answering important biomedical research questions using software. Biological image analysis is interdisciplinary - it concretely demonstrates mathematics and computer science to students in the context of high-impact biomedical research. Sign up for notifications. Of workshops open to the public. Discovering Medicines, Using Robots and Computers. Pictures of Cells (.pdf).

cellprofiler.org

CellProfiler

http://cellprofiler.org/faq.shtml

How do I get started? Where can I find out more information about CellProfiler 2.1? Are CellProfiler and CellProfiler Analyst free? What is the difference between CellProfiler and CellProfiler Analyst? Do CellProfiler and CellProfiler Analyst have to be used together? How do I analyze my CellProfiler data? I'm an image processing expert. Why should I use CellProfiler for development? I'm an image processing expert. Can I use CellProfiler modules as part of a larger software package? Do CellProfiler and C...

cellprofiler.org

CellProfiler

http://cellprofiler.org/tutorials.shtml

Documents are in PDF and PPS (self-starting Powerpoint slide) format. Technical descriptions of CellProfiler and CellProfiler Analyst software can be found in our papers. Our introduction to automated image analysis principles and practicalities is published as an educational article. The NIH has published a introductory chapter. Of "best practices" for image-based high-content screening (in which CellProfiler is mentioned) as part of the Assay Guidance Manual. On image analysis methods. We also post gui...

cellprofiler.org

CellProfiler

http://cellprofiler.org/downloadCPA.shtml

Download CellProfiler Analyst 2.0 DMG for Mac (r11710). Then open the DMG, copy CPAnalyst.app to your Applications folder). Download CellProfiler Analyst 2.0 for Windows (r11710). Run the EXE and follow the prompts). CPAnalyst cannot run without data to analyze. Example data and accompanying images for use with CPAnalyst 2.0 are available here. Manual for CPA 2.0. Manual for CPA 1.0.

cellprofiler.org

CellProfiler example pipelines and utlities

http://cellprofiler.org/examples.shtml

The best way to learn how to use CellProfiler and CellProfiler Analyst is to download our examples and try it out! CellProfiler example images and pipelines. Jump to CellProfiler Analyst example. How do I get started? Download example images along with pipelines so you can get immediate hands-on experience in using CellProfiler. Download the example images and pipeline from the list below and run it in CellProfiler to see how it works. Try the pipeline on your own images. Pipelines using the WormToolbox.

cellprofiler.org

CellProfiler

http://cellprofiler.org/wormtoolbox

A component of CellProfiler cell image analysis software. The WormToolbox is a toolbox for high-throughput screening of image-based Caenorhabditis elegans. Phenotypes. The image analysis algorithms measure morphological phenotypes in individual worms and are effective for a variety of assays and imaging systems. WormToolbox is available through CellProfiler and enables objective scoring of whole-worm high-throughput image-based assays of C. elegans. Load input images from QORO assay. If the provided defa...

cellprofiler.org

CellProfiler

http://cellprofiler.org/supportplan.shtml

Gain direct access to the CellProfiler team, while supporting the CellProfiler project! 50 hours of CellProfiler-related support and training. From the team behind CellProfiler. Image analysis pipeline development and optimization, plus expert advice in designing an image-based experiment including sample preparation and image acquisition. Adding features of interest to the open-source CellProfiler project that do not conflict with CellProfiler's roadmap. 20% discount on workshops held at your location.

cellprofiler.org

CellProfiler

http://cellprofiler.org/about.shtml

Descriptions of the CellProfiler project can be found on the Press. The CellProfiler project is based at the Broad Institute Imaging Platform. It was started by Anne E. Carpenter. And Thouis (Ray) Jones. In the laboratories of David M. Sabatini. At the Whitehead Institute for Biomedical Research. The Broad Institute Imaging Platform is available for non-profit consulting on challenging image analysis and data mining projects. Learn more and contact us via the Carpenter lab website. Merck/MIT Computationa...

cellprofiler.org

CellProfiler

http://cellprofiler.org/press.shtml

Impact of CellProfiler on human health. Publications, videos, articles, and other press. Our own descriptions of our work. Descriptions of our work. 2015: Anne Carpenter's keynote speech on high content morphology profiling at King's College of London in September 2015 [ Link to YouTube. 2015: "Ask the Expert" article featuring Anne Carpenter in Lab Manager [ Link to Lab Manager article. 2015: Article about CellProfiler and interview with Anne Carpenter in GEN magazine [ Link to GEN magazine article.