ftp.genome.washington.edu ftp.genome.washington.edu

ftp.genome.washington.edu

Green Group

Laboratory of PHIL GREEN. C A GCACG CA.

http://ftp.genome.washington.edu/

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Green Group | ftp.genome.washington.edu Reviews

https://ftp.genome.washington.edu

Laboratory of PHIL GREEN. C A GCACG CA.

INTERNAL PAGES

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1

Publications

http://ftp.genome.washington.edu/publications/publications.html

Rubin AF and Green P: Expression-based segmentation of the. Gordon D and Green P:. A graphical editor for next-generation sequencing. Green P and Ewing B: Comment on â Evidence of Abundant Purifying Selection in Humans for Recently Acquired Regulatory Functions.â. Integrative Analysis of the. Genome by the modENCODE Project. McVicker G and Green P: Genomic signatures of germline gene expression. Nielsen CB, Cantor M, Dubchak I, Gordon D, Wang T: Visualizing genomes: techniques and challenges. Celniker SE...

2

Untitled Document

http://ftp.genome.washington.edu/othersoftware.html

Data for Genomic signatures of germline gene expression. McVicker G and Green P: Genomic signatures of germline gene expression. Background selection (B) value estimates. Calculated using gcons conserved segments. Score 10) and a finescale recombination map (Myers et al. 2005). Coordinates are for the NCBI36/hg 18 version of the human genome assembly. McVicker G, Gordon D, Davis C, Green P: Widespread genomic signatures of natural selection in hominid evolution. 101:13994-4001, Epub Aug. 03 (2004). Is a ...

3

Lab Members

http://ftp.genome.washington.edu/labmembers.html

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Green Group

http://ftp.genome.washington.edu/index.html

Laboratory of PHIL GREEN. C A GCACG CA.

5

Phred, Phrap, and Consed

http://ftp.genome.washington.edu/phredphrapconsed.html

Phred, Phrap, Consed. CALF (Compact ALignment Format). The phred software reads DNA sequencing trace files, calls bases, and assigns a quality value to each called base. The quality value is a log-transformed error probability, specifically. Q = -10 log. Where Q and P. Are respectively the quality value and error probability of a particular base call. The phred quality values have been thoroughly tested for both accuracy and power to discriminate between correct and incorrect base-calls. Swat is a progra...

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