funcoup2.sbc.su.se

FunCoup

Members of the same complex. Which gene/protein IDs to use? Glycolysis / Gluconeogenesis, KEGG00010. Citrate cycle (TCA cycle), KEGG00020. Pentose phosphate pathway, KEGG00030. Pentose and glucuronate interconversions, KEGG00040. Fructose and mannose metabolism, KEGG00051. Galactose metabolism, KEGG00052. Ascorbate and aldarate metabolism, KEGG00053. Starch and sucrose metabolism, KEGG00500. Amino sugar and nucleotide sugar metabolism, KEGG00520. Pyruvate metabolism, KEGG00620. ATP synthesis, KEGG00193.

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FunCoup | funcoup2.sbc.su.se Reviews

<META> DESCRIPTION

Members of the same complex. Which gene/protein IDs to use? Glycolysis / Gluconeogenesis, KEGG00010. Citrate cycle (TCA cycle), KEGG00020. Pentose phosphate pathway, KEGG00030. Pentose and glucuronate interconversions, KEGG00040. Fructose and mannose metabolism, KEGG00051. Galactose metabolism, KEGG00052. Ascorbate and aldarate metabolism, KEGG00053. Starch and sucrose metabolism, KEGG00500. Amino sugar and nucleotide sugar metabolism, KEGG00520. Pyruvate metabolism, KEGG00620. ATP synthesis, KEGG00193.

<META> KEYWORDS

1 what is funcoup

2 getting started

3 release notes

4 input data

5 download

6 citations

7 find genes/gene groups

8 displayed as

9 query

10 human

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what is funcoup,getting started,release notes,input data,download,citations,find genes/gene groups,displayed as,query,human,mus musculus,rattus norvegicus,canis familiaris,gallus gallus,danio rerio,ciona intestinalis,drosophila melanogaster,network,map s

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FunCoup | funcoup2.sbc.su.se Reviews

https://funcoup2.sbc.su.se

Members of the same complex. Which gene/protein IDs to use? Glycolysis / Gluconeogenesis, KEGG00010. Citrate cycle (TCA cycle), KEGG00020. Pentose phosphate pathway, KEGG00030. Pentose and glucuronate interconversions, KEGG00040. Fructose and mannose metabolism, KEGG00051. Galactose metabolism, KEGG00052. Ascorbate and aldarate metabolism, KEGG00053. Starch and sucrose metabolism, KEGG00500. Amino sugar and nucleotide sugar metabolism, KEGG00520. Pyruvate metabolism, KEGG00620. ATP synthesis, KEGG00193.

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funcoup2.sbc.su.se

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Index of /download/Version_2.0

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Index of /download/Version 2.0. Apache/2.2.15 (CentOS) Server at funcoup2.sbc.su.se Port 80.

2

FunCoup web query examples

http://funcoup2.sbc.su.se/which_ids.htm

Gene name/symbol; for human, see http:/ www.genenames.org/. OMIM ID (human only);. KEGG pathway (format: KEGG# # #);. Zfin ID, AC, XPAT (D. rerio);. Affymetrix and Agilent microarray ID (D. rerio);. Aniseed, JG1 v.2, EntrezGene ( C. intestinalis. FBgn ( D. melanogaster. WBGene, WormBase ( C. elegans. SGD ORF ( S. cerevisiae. AGI locus ( A. thaliana.

3

What is FunCoup?

http://funcoup2.sbc.su.se/what_is_this.html

Is a statistical framework of data integration for finding functional coupling (FC) between proteins. It transfers information from model organisms ( M. musculus. Etc) via orthologs found by InParanoid. Program (Remm et al., 2001). To address known drawbacks of Bayesian predictors, FunCoup. Has optimized several aspects:. Ways to choose among alternative values from multiple pairs of homologs;. Optimized partitioning to render continuous metrics discrete;. See more details here. Of the web site is design...

4

FunCoup FAQ

http://funcoup2.sbc.su.se/faq.html

Q What other resources of this sort can I use? Q Why should I use FunCoup? A FunCoup derives novel. Functional links from mostly raw. Large scale database annotations (UniProt, eSLDB, IntAct etc.). FunCoup estimates each piece of information by relevance. Moreover, FunCoup employs carefully tested algorithms of across-species data transfer via orthologs and is Eukaryota. Wide - networks for multiple organisms are available and comparable. Or protein-protein links ( HPRD. Hence, the brief answer is: you.

5

Citations

http://funcoup2.sbc.su.se/citations.html

If you use FunCoup in your research, please cite:. Comparative interactomics with Funcoup 2.0", Andrey Alexeyenko, Thomas Schmitt, Andreas Tjärnberg, Dmitri Guala, Oliver Frings, Erik L.L. Sonnhammer, Nucleic Acids Research, 40:D821-D828 (2012). Global networks of functional coupling in eukaryotes from comprehensive data integration", Andrey Alexeyenko and Erik L.L. Sonnhammer, Genome Research, 19:1107-1116 (2009). Other publications pertaining to FunCoup:.

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Get help and find out more - FunCoup

http://funcoup.sbc.su.se/help

The name FunCoup [fən kəp] stands for fun. Ling FunCoup is a framework to infer genome-wide functional couplings in 11 model organisms. Functional coupling, or functional association, is an unspecific form of association that encompasses direct physical interaction but also more general types of direct or indirect interaction like regulatory interaction or participation the same process or pathway. Evidence is transfered across species using orthology assignments from InParanoid. Are combined, where inte...

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Networks of functional couplings/associations - FunCoup

Search for functional couplings. Functional coupling, or functional association, is an unspecific form of association that encompasses direct physical interaction but also more general types of direct or indirect interaction like regulatory interaction or participation the same process or pathway. To search for genes coupled to your genes of interest or for couplings between them enter your genes in the text box and hit the search button. Supported identifier types for the search are:. A set of genes.

funcoup2.sbc.su.se

FunCoup

Members of the same complex. Which gene/protein IDs to use? Glycolysis / Gluconeogenesis, KEGG00010. Citrate cycle (TCA cycle), KEGG00020. Pentose phosphate pathway, KEGG00030. Pentose and glucuronate interconversions, KEGG00040. Fructose and mannose metabolism, KEGG00051. Galactose metabolism, KEGG00052. Ascorbate and aldarate metabolism, KEGG00053. Starch and sucrose metabolism, KEGG00500. Amino sugar and nucleotide sugar metabolism, KEGG00520. Pyruvate metabolism, KEGG00620. ATP synthesis, KEGG00193.

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