fungalgenomes.org fungalgenomes.org

fungalgenomes.org

Fungal Genome Resources

Genomes of 1000 fungi. For new data mining tool for Fungal genomics and Fungal Genomes Tools. Site which will link out to more fungal genome tools. Resources on this site. Of in-progress and published fungal genomes. Including gene predictions, gene prediction training,and pre-processed genome data. Data files of fungal Proteins. And the GFF3 gene annotation. Find out more about our research at the Stajich laboratory, UC Riverside.

http://www.fungalgenomes.org/

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Fungal Genome Resources | fungalgenomes.org Reviews
<META>
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Genomes of 1000 fungi. For new data mining tool for Fungal genomics and Fungal Genomes Tools. Site which will link out to more fungal genome tools. Resources on this site. Of in-progress and published fungal genomes. Including gene predictions, gene prediction training,and pre-processed genome data. Data files of fungal Proteins. And the GFF3 gene annotation. Find out more about our research at the Stajich laboratory, UC Riverside.
<META>
KEYWORDS
1 fungal genome research
2 blog
3 the hyphal tip
4 wiki
5 research projects
6 gbrowse
7 gbrowse2
8 genome browser
9 fungal genome tools
10 see fungidb
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Fungal Genome Resources | fungalgenomes.org Reviews

https://fungalgenomes.org

Genomes of 1000 fungi. For new data mining tool for Fungal genomics and Fungal Genomes Tools. Site which will link out to more fungal genome tools. Resources on this site. Of in-progress and published fungal genomes. Including gene predictions, gene prediction training,and pre-processed genome data. Data files of fungal Proteins. And the GFF3 gene annotation. Find out more about our research at the Stajich laboratory, UC Riverside.

SUBDOMAINS

tools.fungalgenomes.org tools.fungalgenomes.org

Fungal Genome Tools

Low traffic mailing list. About fungal genome tool development and resources. Tools Session @Fungal Genetics 2013, Asilomar Conference Center. AspGD / CGD / SGD. Tools Session @Fungal Genetics 2011, Asilomar Conference Center. Presentations (also available at Google Docs. More Please email jason.stajich[at]ucr.edu if you would like to have your site listed.

stajichlab.fungalgenomes.org stajichlab.fungalgenomes.org

Fungal Evolutionary Genomics | Stajich laboratory at UC Riverside

December 9, 2013. We congratulate Divya on defending her dissertation on “Discovery of fungal cell wall components using evolutionary and functional genomics”. Her last revisions and formatting is taking place and she should be the first minted PhD from the Stajich lab before Christmas. We are happy and proud of her accomplishment to complete this important milestone! December 9, 2013. We are happy to welcome Dr Ousmane Cisse. August 27, 2013. Today was the presentations from UCR RISE. August 27, 2013.

1000.fungalgenomes.org 1000.fungalgenomes.org

1000 Fungal Genomes Project | Sequencing unsampled fungal diversity

1000 Fungal Genomes Project. Extracting DNA and RNA from fruiting bodies. Extraction of high quality DNA for Genome Sequencing. Genomic DNA QC for JGI collaborators. March 12, 2015. Jason Stajich on Google. Pseudovirgaria hyperparasitica genome released. November 7, 2014. 1KFG is pleased to announce the public release of the genome of Pseudovirgaria hyperparasitica CBS 121739. Was contributed to the 1KFG project by Pedro Crous. Jason Stajich on Google. Tothia fuscella genome released. November 4, 2014.

INTERNAL PAGES

fungalgenomes.org fungalgenomes.org
1

The Hyphal Tip | Digesting the fungal genomes

http://www.fungalgenomes.org/blog

WRIFO: Women Researchers in Fungi & Oomycetes. Postdoc: UMichigan Fungal Genomics. August 4, 2016. And the Joint Genome Institute (JGI). The projects are supported by NSF and two JGI Community Sequencing Projects. Our lab ( www.umich.edu/ mycology. Pursues diverse projects in mycology, and the environment is conducive to development of a pathway to independence in academic research. The lab is in the Department of Ecology and Evolutionary Biology ( http:/ www.eeb.lsa.umich.edu/. Timothy Y. James. The Dep...

2

Index of /data/Gene_prediction

http://www.fungalgenomes.org/data/Gene_prediction

Index of /data/Gene prediction. Apache/2.2.22 (Debian) Server at www.fungalgenomes.org Port 80.

3

Index of /data/PEP

http://www.fungalgenomes.org/data/PEP

Ajellomyces capsulatus NAm1.02-JUL-2007.pep.fasta.gz. 24-Aug-2008 12:00 2.8M. Aspergillus clavatus NRRL 1.14-DEC-2006.pep.fasta.gz. 24-Aug-2008 12:00 3.0M. Aspergillus fumigatus A1163.18-APR-2008.pep.fa.gz. 12-Jun-2008 16:46 3.2M. Aspergillus fumigatus Af293.12-MAY-2007.pep.fasta.gz. 24-Aug-2008 11:59 3.1M. Aspergillus niger CBS 51388.04-SEP-2007.pep.fasta.gz. 24-Aug-2008 11:59 3.9M. Aspergillus oryzae RIB40.23-DEC-2005.pep.fasta.gz. 24-Aug-2008 11:59 3.6M. 24-Aug-2008 11:59 3.5M. Kluyveromyces lactis NR...

4

Index of /data/NT

http://www.fungalgenomes.org/data/NT

Ajellomyces capsulatus G186AR.31-AUG-2007.nt.fasta.bz2. 24-Aug-2008 12:03 8.3M. Ajellomyces capsulatus NAm1.02-JUL-2007.nt.fasta.bz2. 24-Aug-2008 12:03 8.5M. Ascosphaera apis USDA-ARSEF 7405.18-AUG-2006.nt.fasta.bz2. 24-Aug-2008 12:03 5.4M. Aspergillus clavatus NRRL 1.14-DEC-2006.nt.fasta.bz2. 24-Aug-2008 12:03 7.7M. Aspergillus flavus NRRL3357.20-AUG-2007.nt.fasta.bz2. Aspergillus fumigatus A1163.18-APR-2008.fasta.bz2. 12-Jun-2008 16:46 8.1M. 24-Aug-2008 12:03 8.1M. 24-Aug-2008 12:03 8.0M. Coccidioides ...

5

Index of /data/CDS

http://www.fungalgenomes.org/data/CDS

Ajellomyces capsulatus NAm1.02-JUL-2007.cds.fasta.gz. 24-Aug-2008 12:00 4.1M. Aspergillus clavatus NRRL 1.14-DEC-2006.cds.fasta.gz. 24-Aug-2008 12:00 4.4M. Aspergillus fumigatus A1163.18-APR-2008.cds.fasta.gz. 24-Aug-2008 12:00 4.8M. Aspergillus fumigatus Af293.12-MAY-2007.cds.fasta.gz. 24-Aug-2008 12:00 4.7M. Aspergillus niger CBS 51388.04-SEP-2007.cds.fasta.gz. 24-Aug-2008 11:59 5.8M. Aspergillus oryzae RIB40.23-DEC-2005.cds.fasta.gz. 24-Aug-2008 11:59 5.4M. 24-Aug-2008 11:59 5.1M. Kluyveromyces lactis...

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Jason Stajich | Fungal Evolutionary Genomics

http://lab.stajich.org/home/people/jason-stajich

Stajich laboratory @ UC Riverside. GEN220 – Computational Analysis of High Throughput Biological Data. Fungal genome sequencing and analyses. Blogs you should read. Email: jaso …. Associate Professor, Department of Plant Pathology and Microbiology. And Institute for Integrative Genome Biology. We are currently focused on projects that include the filamentous mold. Early diverging chytrid fungi including the frog killing chytrid fungus B. I am involved in several fungal genome projects. Projects and the d...

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Genomes of 1000 fungi. For new data mining tool for Fungal genomics and Fungal Genomes Tools. Site which will link out to more fungal genome tools. Resources on this site. Of in-progress and published fungal genomes. Including gene predictions, gene prediction training,and pre-processed genome data. Data files of fungal Proteins. And the GFF3 gene annotation. Find out more about our research at the Stajich laboratory, UC Riverside.

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Genomes of 1000 fungi. For new data mining tool for Fungal genomics and Fungal Genomes Tools. Site which will link out to more fungal genome tools. Resources on this site. Of in-progress and published fungal genomes. Including gene predictions, gene prediction training,and pre-processed genome data. Data files of fungal Proteins. And the GFF3 gene annotation. Find out more about our research at the Stajich laboratory, UC Riverside.

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