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Ask the GATK team. 160; Best Practices Workflows. 160; Methods and Algorithms. 160; Tutorials. 160; Dictionary. 160; Frequently Asked Questions. 160; Solutions to Problems. 160; Pipelining Options. 160; Tutorials. 160; Frequently Asked Questions. 160; Solutions to Problems. 160; Methods and Algorithms. 160; Dictionary. 160; GATK 4 Beta. 160; Archive. Tools related to GATK. 160; MuTect v1. 160; MuTect v1 Documentation. 160; ReCapSeg. 160; Oncotator. To celebrate the...

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GATK Support Forum — GATK-Forum | gatkforums.broadinstitute.org Reviews

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Ask the GATK team. 160; Best Practices Workflows. 160; Methods and Algorithms. 160; Tutorials. 160; Dictionary. 160; Frequently Asked Questions. 160; Solutions to Problems. 160; Pipelining Options. 160; Tutorials. 160; Frequently Asked Questions. 160; Solutions to Problems. 160; Methods and Algorithms. 160; Dictionary. 160; GATK 4 Beta. 160; Archive. Tools related to GATK. 160; MuTect v1. 160; MuTect v1 Documentation. 160; ReCapSeg. 160; Oncotator. To celebrate the...

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GATK Support Forum — GATK-Forum | gatkforums.broadinstitute.org Reviews

https://gatkforums.broadinstitute.org

Ask the GATK team. 160; Best Practices Workflows. 160; Methods and Algorithms. 160; Tutorials. 160; Dictionary. 160; Frequently Asked Questions. 160; Solutions to Problems. 160; Pipelining Options. 160; Tutorials. 160; Frequently Asked Questions. 160; Solutions to Problems. 160; Methods and Algorithms. 160; Dictionary. 160; GATK 4 Beta. 160; Archive. Tools related to GATK. 160; MuTect v1. 160; MuTect v1 Documentation. 160; ReCapSeg. 160; Oncotator. To celebrate the...

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MuTect v1 — GATK-Forum

https://gatkforums.broadinstitute.org/categories/mutect

The current GATK version is 3.6-0. Ask the GATK team. 160; Tutorials. 160; FAQs. 160; Presentations. 160; Common Problems. 160; Methods and Algorithms. 160; Dictionary. 160; Pipelining with Queue. 160; Developer Zone. 160; Archive. Tools related to GATK. 160; MuTect v1. 160; MuTect v1 Documentation. 160; ReCapSeg. 160; ReCapSeg Documentation. 160; Oncotator. 160; Oncotator documentation. 160; GenomeSTRiP. 160; XHMM. Ask the GATK team. Tools related to GATK.

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Sign In — GATK-Forum

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Ask the GATK team. 160; Tutorials. 160; FAQs. 160; Presentations. 160; Common Problems. 160; Methods and Algorithms. 160; Dictionary. 160; Pipelining with Queue. 160; Developer Zone. 160; Archive. Tools related to GATK. 160; MuTect v1. 160; MuTect v1 Documentation. 160; ReCapSeg. 160; ReCapSeg Documentation. 160; Oncotator. 160; Oncotator documentation. 160; GenomeSTRiP. 160; GenomeSTRiP Documentation. 160; XHMM. Sign In with Twitter. Sign In with Google.

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Announcements — GATK-Forum

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The current GATK version is 3.6-0. Ask the GATK team. 160; Tutorials. 160; FAQs. 160; Presentations. 160; Common Problems. 160; Methods and Algorithms. 160; Dictionary. 160; Pipelining with Queue. 160; Developer Zone. 160; Archive. Tools related to GATK. 160; MuTect v1. 160; MuTect v1 Documentation. 160; ReCapSeg. 160; ReCapSeg Documentation. 160; Oncotator. 160; Oncotator documentation. 160; GenomeSTRiP. 160; XHMM. Ask the GATK team. Tools related to GATK.

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VCF output — GATK-Forum

https://gatkforums.broadinstitute.org/discussion/2251/vcf-output

The current GATK version is 3.6-0. Ask the GATK team. 160; Tutorials. 160; FAQs. 160; Presentations. 160; Common Problems. 160; Methods and Algorithms. 160; Dictionary. 160; Pipelining with Queue. 160; Developer Zone. 160; Archive. Tools related to GATK. 160; MuTect v1. 160; MuTect v1 Documentation. 160; ReCapSeg. 160; ReCapSeg Documentation. 160; Oncotator. 160; Oncotator documentation. 160; GenomeSTRiP. 160; XHMM. Ask the GATK team. Tools related to GATK.

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Old version of Best Practices from GATK 2.0 [RETIRED] — GATK-Forum

https://gatkforums.broadinstitute.org/discussion/1186/best-practice-variant-detection-with-the-gatk-v4-for-release-2-0

The current GATK version is 3.6-0. Old version of Best Practices from GATK 2.0 [RETIRED]. Ask the GATK team. 160; Tutorials. 160; FAQs. 160; Presentations. 160; Common Problems. 160; Methods and Algorithms. 160; Dictionary. 160; Pipelining with Queue. 160; Developer Zone. 160; Archive. Tools related to GATK. 160; MuTect v1. 160; MuTect v1 Documentation. 160; ReCapSeg. 160; ReCapSeg Documentation. 160; Oncotator. 160; GenomeSTRiP. 160; XHMM. Ask the GATK team. Our c...

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cpwardell.com

September | 2012 | cpwardell.com

http://www.cpwardell.com/2012/09

Bioinformatics, code and computational biology. September 3, 2012. September 3, 2012. GATK 2.X is here. If you’re in the business of variant discovery (and I am, amongst other things), you’ll know that things are changing and changing fast. A few years ago if you’d asked me what a SNV (Single Nucleotide Variant) was, I might have thought that you’d misspelled SNP ( Single Nucleotide Polymorphism. I was also fairly distrustful of SNP arrays owing to endless (and continuing) bad experiences with expression...

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GATK Support Forum — GATK-Forum

Ask the GATK team. 160; Best Practices Workflows. 160; Methods and Algorithms. 160; Tutorials. 160; Dictionary. 160; Frequently Asked Questions. 160; Solutions to Problems. 160; Pipelining Options. 160; Tutorials. 160; Frequently Asked Questions. 160; Solutions to Problems. 160; Methods and Algorithms. 160; Dictionary. 160; GATK 4 Beta. 160; Archive. Tools related to GATK. 160; MuTect v1. 160; MuTect v1 Documentation. 160; ReCapSeg. 160; Oncotator. To celebrate the...

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