The gcua tools display the codon usage in a graphical manner.Differences in codon usage among organisms can lead to a variety of problems concerning heterologous gene expression. Heterologous protein expression...
http://gcua.schoedl.de/
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Graphical Codon Usage Analyser | gcua.schoedl.de Reviews
https://gcua.schoedl.de
The gcua tools display the codon usage in a graphical manner.Differences in codon usage among organisms can lead to a variety of problems concerning heterologous gene expression. Heterologous protein expression...
gcua.schoedl.de
gcua sequential
http://gcua.schoedl.de/sequential_v2.html
Fasta identifier overrides this textbox. Use textfield below for not listed organisms. Select box overrides textfield. Paste in raw or fasta format. Threshold 1: Few used codons. Highlight codons used less than. Threshold 2: Very few used codons. Highlight codons used less than. Display non highlighted codons in. Codon usage table to apply. If organism not listed, select "http url" and paste. Url in textbox below - select box overrides given http url. Http:/ www.kazusa.or.jp . New in version 2.0.
gcua history
http://gcua.schoedl.de/version.html
Server migration. PDF generation ported from pdflib. Output option pdf will no longer be supported in old versions. Implementation of relative adaptiveness. Read more . Old versions can be found using the following links:. 149; each triplet position vs. usage table. 149; each codon vs. usage table. 149; compare two usage tables. Feel free to contact me! Idea born in 2001.
gcua cite
http://gcua.schoedl.de/cite.html
Published research assisted by this software should cite:. Monitoring dynamic expression of nuclear genes in Chlamydomonas reinhardtii. By using a synthetic luciferase reporter gene. Fuhrmann M, Hausherr A, Ferbitz L, Schödl T, Heitzer M, Hegemann P. Plant Mol Biol. 2004 Aug;55(6):869-81. Http:/ dx.doi.org/10.1007/s11103-005-2150-1.
gcua compare
http://gcua.schoedl.de/compare_v2.html
Codon usage table #1. If organism not listed, select "http url" and paste. Url in textbox below - select box overrides given http url. Http:/ www.kazusa.or.jp . Codon usage table #2. If organism not listed, select "http url" and paste. Url in textbox below - select box overrides given http url. Http:/ www.kazusa.or.jp . New in version 2.0. Relative adaptiveness read more. Frequency (like in gcua version 1.0). If option email is selected please enter address. October 6th 2006 please cite .
gcua index
http://gcua.schoedl.de/seqoverallex.html
Each codon vs. usage table. Compare two usage tables. This graphical representation shows the fraction of each codon compared to the fraction of the same codon in another organism. Comparisons can be made between a submitted sequence and a codon usage table or simply between two codon usage tables. Different colors can be choosen for sequence. And codon usage table, or for each of the two codon usage tables. Additional to the information of the html. Output format the pdf. Comparing gene to usage table.
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Is there any rare codon analysis capability. Perhaps a plugin I missed? : Geneious Support
https://support.geneious.com/entries/22230243-Is-there-any-rare-codon-analysis-capability-Perhaps-a-plugin-I-missed-
Check your existing requests. Is there any rare codon analysis capability. Perhaps a plugin I missed? Asked this on October 23, 2012, 05:41. I need to know about the the suitability of various expression systems. Currently, I use various wed based services to do the analysis. Have I overlooked some thing in Geneious. October 23, 2012, 07:45. I'd agree this is useful to consider in the future, especially for those of us doing heterologous expression. Here's a site to get you started:.
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International Commission for the Taxonomy of Fungi (ICTF). International Union of Microbiological Societies (IUMS, Mycology Division). Enter your search terms. ISTH Software Links Collection. Baylor College of Medicine HGSC ( http:/ www.hgsc.bcm.tmc.edu/HGSC home.html. Entelechon ( http:/ www.entelechon.com/index.php? Windows XP, Windows 2000, Windows 98, Mac OS X, Linux, Solaris. European Bioinformatics Institute ( http:/ www.ebi.ac.uk. ExPASy ( http:/ www.expasy.org/tools/#ptm. Win, Mac, UNIX.
ExPASy: SIB Bioinformatics Resource Portal - Proteomics Tools
http://www.expasy.org/tools
Query within a category:. Query a specific database:. Protein sequences and identification. Sequence sites, features and motifs. Please note that this page is not updated anymore and remains static. However, many of the external resources listed below are available in the category proteomics. Protein identification and characterization. Pattern and profile searches. Protein identification and characterization. Identification and characterization with peptide mass fingerprinting data. Open modification sp...
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Graphical Codon Usage Analyser
Contact me for exclusive advertising opportunities. Differences in codon usage preference among organisms lead to a variety of problems concerning heterologous gene expression but can be overcome by rational gene design and gene synthesis. The gcua tool displays the codon quality either in codon usage frequency values or relative adaptiveness. Each triplet position vs. usage table. Each codon vs. usage table. Codon usage related links. Contact me for exclusive advertising opportunities.
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