genome.cse.ucsc.edu genome.cse.ucsc.edu

genome.cse.ucsc.edu

UCSC Genome Browser Home

UCSC Genome Browser

http://genome.cse.ucsc.edu/

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UCSC Genome Browser Home | genome.cse.ucsc.edu Reviews
<META>
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UCSC Genome Browser
<META>
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1 genome
2 genome browser
3 human genome
4 genome assembly
5 Blat
6 UCSC
7 bioinformatics
8 gene prediction
9 SNP
10 SNPs
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genome browser,genomes,mouse ncbi37/mm9,mouse 16 strains,configure,track search,tools,blat,table browser,variant annotation integrator,data integrator,gene interactions,gene sorter,genome graphs,in silico pcr,liftover,visigene,other utilities,mirrors,news
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UCSC Genome Browser Home | genome.cse.ucsc.edu Reviews

https://genome.cse.ucsc.edu

UCSC Genome Browser

INTERNAL PAGES

genome.cse.ucsc.edu genome.cse.ucsc.edu
1

Human Genome Graphs

http://genome.cse.ucsc.edu/cgi-bin/hgGenome

Reset All User Settings. Help on Genome Graphs. No graph data is available for this assembly. Upload your own data or import from a table or custom track. Genome Graphs is a tool for displaying genome-wide data sets such as the results of genome-wide SNP association studies, linkage studies and homozygosity mapping. This section provides line-by-line descriptions of the controls on this page. For more detailed instructions, see the Genome Graphs User's Guide. Specifies which clade the organism is in.

2

Table Browser

http://genome.cse.ucsc.edu/cgi-bin/hgTables

Reset All User Settings. Help on Table Browser. Use this program to retrieve the data associated with a track in text format, to calculate intersections between tracks, and to retrieve DNA sequence covered by a track. For help in using this application see Using the Table Browser. For a description of the controls in this form, the User's Guide. For general information and sample queries, and the OpenHelix Table Browser tutorial. Or our public MySQL server. Send data to GenomeSpace. Pfam in UCSC Gene.

3

UCSC Genome Browser: Utilities

http://genome.cse.ucsc.edu/util.html

Reset All User Settings. UCSC Genome Browser Utilities. This page contains links to tools and utilities created by the UCSC Genome Bioinformatics Group. Batch Coordinate Conversion (liftOver). Converts genome coordinates and genome annotation files between assemblies. The current version supports both forward and reverse conversions, as well as conversions between selected species. Phylogenetic Tree Gif Maker. Executable and Source Code Downloads.

4

Downloading Data

http://genome.cse.ucsc.edu/goldenPath/help/ftp.html

Reset All User Settings. Downloading Data: Please Use Rsync. We recommend that you download data via rsync using the command line, especially for large files. For example, when downloading ENCODE files to your present directory (./), you would use an expression such as:. Rsync -a -P rsync:/ hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeDir/wgEncodeFile ./. To download the entire directory (note the trailing slash), you would use an expression such as:. Downloading from a Web Browser. However,...

5

UCSC Genome Browser: Annotation Database

http://genome.cse.ucsc.edu/goldenPath/gbdDescriptions.html

Reset All User Settings. The Genome Browser Database. The table descriptions page for the annotation database is no longer maintained. Instead, you can retrieve the latest schemas for tables underlying the Genome Browser annotation tracks from the Table Browser. Using the describe table schema button. For more information on using the Table Browser, see the Table Browser User's Guide. To access the unmaintained version of the annotation database table descriptions page, click here.

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TOTAL PAGES IN THIS WEBSITE

21

LINKS TO THIS WEBSITE

electrobionics.com electrobionics.com

Molecular and Cellular Biology Reference

http://www.electrobionics.com/mol_biol_ref.html

Molecular Cell Biology References. Genomics, Trancriptomics, Proteomics. Genomics, Transcriptomics, Proteomics, Membranomics. Amino Acid Information - Beavis, Rockefeller University. Biocomputing at the University of Calgary. CDNA Microarray Project (NIH). Codes - Nucleotide Triplets; Single-letter, Three-letter Amino Acids. Developmental Studies Hybridoma Bank. Ensembl (Human Genome Server). GeneCards™ (database of human genes). Human Genome Project Working Draft. Statistical Analysis of Microarray Data.

bioelectrophysics.com bioelectrophysics.com

Molecular and Cellular Biology Reference

http://www.bioelectrophysics.com/mol_biol_ref.html

Molecular Cell Biology References. Genomics, Trancriptomics, Proteomics. Genomics, Transcriptomics, Proteomics, Membranomics. Amino Acid Information - Beavis, Rockefeller University. Biocomputing at the University of Calgary. CDNA Microarray Project (NIH). Codes - Nucleotide Triplets; Single-letter, Three-letter Amino Acids. Developmental Studies Hybridoma Bank. Ensembl (Human Genome Server). GeneCards™ (database of human genes). Human Genome Project Working Draft. Statistical Analysis of Microarray Data.

electrobionics.org electrobionics.org

Molecular and Cellular Biology Reference

http://www.electrobionics.org/mol_biol_ref.html

Molecular Cell Biology References. Genomics, Trancriptomics, Proteomics. Genomics, Transcriptomics, Proteomics, Membranomics. Amino Acid Information - Beavis, Rockefeller University. Biocomputing at the University of Calgary. CDNA Microarray Project (NIH). Codes - Nucleotide Triplets; Single-letter, Three-letter Amino Acids. Developmental Studies Hybridoma Bank. Ensembl (Human Genome Server). GeneCards™ (database of human genes). Human Genome Project Working Draft. Statistical Analysis of Microarray Data.

microelectrobiology.com microelectrobiology.com

Molecular and Cellular Biology Reference

http://www.microelectrobiology.com/mol_biol_ref.html

Molecular Cell Biology References. Genomics, Trancriptomics, Proteomics. Genomics, Transcriptomics, Proteomics, Membranomics. Amino Acid Information - Beavis, Rockefeller University. Biocomputing at the University of Calgary. CDNA Microarray Project (NIH). Codes - Nucleotide Triplets; Single-letter, Three-letter Amino Acids. Developmental Studies Hybridoma Bank. Ensembl (Human Genome Server). GeneCards™ (database of human genes). Human Genome Project Working Draft. Statistical Analysis of Microarray Data.

genenames.org genenames.org

All links | HUGO Gene Nomenclature Committee

http://www.genenames.org/useful/all-links

Use * to search with a root symbol (eg ZNF*). Old gene families archive. Statistics and downloads help. Genome Databases and Browsers. Human Genome Databases, Browsers and Variation Resources. Other Vertebrate Genome Databases and Browsers. Non-Vertebrate Genome Databases and Browsers. Orthology and Comparative Genomics Resources. Other gene and nucleic acid resources. General gene and nucleic acid resources. Genome Databases and Browsers. Human Genome Databases, Browsers and Variation Resources. A commu...

softlinks.amnh.org softlinks.amnh.org

Evolutionary Genetics Software Links by Sergios-Orestis Kolokotronis

http://softlinks.amnh.org/index.html

Evolutionary genetics software links # softlinks.amnh.org. All Your Base Are Belong To Us. If you don't know what that means, go Wikipedia. AAA Drosophila Genomes wiki. BLAST insect genomes @ NCBI. BLAST eukaryotic genomes @ NCBI. BLAST protozoan genomes @ NCBI. Design by Free CSS Templates.

pulsebionics.com pulsebionics.com

Molecular and Cellular Biology Reference

http://www.pulsebionics.com/mol_biol_ref.html

Molecular Cell Biology References. Genomics, Trancriptomics, Proteomics. Genomics, Transcriptomics, Proteomics, Membranomics. Amino Acid Information - Beavis, Rockefeller University. Biocomputing at the University of Calgary. CDNA Microarray Project (NIH). Codes - Nucleotide Triplets; Single-letter, Three-letter Amino Acids. Developmental Studies Hybridoma Bank. Ensembl (Human Genome Server). GeneCards™ (database of human genes). Human Genome Project Working Draft. Statistical Analysis of Microarray Data.

genenames.org genenames.org

REST service help | HUGO Gene Nomenclature Committee

http://www.genenames.org/help/rest-web-service-help

Use * to search with a root symbol (eg ZNF*). Old gene families archive. Statistics and downloads help. The genenames.org REST web-service is a convenient and quick way of searching and fetching data from our database within a script/program. Users may request results as either XML or JSON making our data easier to parse. There are three requests that can be made using the genenames.org REST web-service, but all use the same root URL of http:/ rest.genenames.org/. 2013-12-05T10:09:20.58Z / str. Bioparadi...

nanoelectrobiology.com nanoelectrobiology.com

Molecular and Cellular Biology Reference

http://www.nanoelectrobiology.com/mol_biol_ref.html

Molecular Cell Biology References. Genomics, Trancriptomics, Proteomics. Genomics, Transcriptomics, Proteomics, Membranomics. Amino Acid Information - Beavis, Rockefeller University. Biocomputing at the University of Calgary. CDNA Microarray Project (NIH). Codes - Nucleotide Triplets; Single-letter, Three-letter Amino Acids. Developmental Studies Hybridoma Bank. Ensembl (Human Genome Server). GeneCards™ (database of human genes). Human Genome Project Working Draft. Statistical Analysis of Microarray Data.

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BBC Genome

Radio Times 1923 - 2009. Welcome to the BBC Genome Project. This site contains the BBC listings information which the BBC printed in Radio Times between 1923 and 2009. You can search the site for BBC programmes, people, dates and Radio Times editions. We hope it helps you find that long forgotten BBC programme, research a particular person or browse your own involvement with the BBC. Through the listings, you will also be able to find thousands of radio and TV programmes. Browse the issue archive. This i...

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genome.co.uk genome.co.uk

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genome.com genome.com

Genome International Corp.

Hassle free analysis of next-generation sequencing data. Cloud-based analysis of high-throughput data. Powerful data visualization and annotation capabilities. Support for several NGS applications (mRNA-Seq, DNA/Exome Seq, Methylyome-Seq, miRNA-Seq, ChIP-Seq). Largest resource of splicing signals. 3D visualization of domain architecture mapped to exon-intron structures of genes. An integrated database of alternative splicing and transcription events. Dynamic platform to analyze disease causing mutations.

genome.cse.ucsc.edu genome.cse.ucsc.edu

UCSC Genome Browser Home

Reset All User Settings. Interactively visualize genomic data. Rapidly align sequences to the genome. Download data from the Genome Browser database. Get functional effect predictions for variant calls. Combine data sources from the Genome Browser database. Find genes that are similar by expression and other metrics. Genome Browser in a Box (GBiB). Run the Genome Browser on your laptop or server. Rapidly align PCR primer pairs to the genome. Convert genome coordinates between assemblies.

genome.cshlp.org genome.cshlp.org

Genome Research

Skip to main page content. Associate Editor Position Available. Top 10 Most Read Articles. Join Us on Facebook. Cold Spring Harbor Molecular Case Studies. Cold Spring Harbor Perspectives in Medicine. Cold Spring Harbor Perspectives in Biology. Cold Spring Harbor Protocols. Cold Spring Harbor Symposia. Books and Other Media. March 27, 2018. GR in the News. E-mail Alerts and RSS Feeds. Enhancer RNA profiling predicts transcription factor activity. Human-specific splicing switch and hepatocellular carcinoma.

genome.dailyfintech.com genome.dailyfintech.com

Fintech Genome

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genome.e-mp.jp genome.e-mp.jp

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Genomics Virtual Lab - GVL Home

Launch your own GVL. Learn with GVL Tutorials. About the GVL Project. A virtual laboratory for genomics research and training. Use our Galaxy servers and genome browser. Get your own private server in the cloud with Galaxy, command-line bioinformatics, RStudio Server and IPython Notebook. Learn genomics methods using our tutorials.