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Apollo - Apollo

First instantaneous, collaborative genomic annotation editor available on the Web. Apollo is designed to support geographically dispersed researchers, and the work of a distributed community is coordinated through automatic synchronization: all edits in one client are instantly pushed to all other clients, allowing users to see annotation updates from collaborators in real-time during the editing process. There are no installation requirements for Annotators! Try Apollo on our Public Demo. Gene Ontology ...

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Apollo - Apollo | genomearchitect.org Reviews

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First instantaneous, collaborative genomic annotation editor available on the Web. Apollo is designed to support geographically dispersed researchers, and the work of a distributed community is coordinated through automatic synchronization: all edits in one client are instantly pushed to all other clients, allowing users to see annotation updates from collaborators in real-time during the editing process. There are no installation requirements for Annotators! Try Apollo on our Public Demo. Gene Ontology ...

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Apollo - Apollo | genomearchitect.org Reviews

https://genomearchitect.org

First instantaneous, collaborative genomic annotation editor available on the Web. Apollo is designed to support geographically dispersed researchers, and the work of a distributed community is coordinated through automatic synchronization: all edits in one client are instantly pushed to all other clients, allowing users to see annotation updates from collaborators in real-time during the editing process. There are no installation requirements for Annotators! Try Apollo on our Public Demo. Gene Ontology ...

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genomearchitect.org

1

Apollo User’s Guide - Apollo

http://genomearchitect.org/users-guide

This guide allows users to:. Become familiar with the environment of the Web Apollo annotation tool. Understand Web Apollo’s functionality for the process of manual annotation. Learn to corroborate and modify computationally predicted gene models using all available gene predictions and biological evidence using Web Apollo. 1 General Process of Manual Annotation. 2 Evidence Provided in the Public Demo. 3 Initial Reconnaissance and Adjustments. 4 Annotating a Gene. 6 The Information Editor. When annotatin...

2

Documentation - Apollo

http://genomearchitect.org/documentation

Access the installation and user guides, as well as instructions on Apollo Web API and the Apollo Tutorial at the GMOD Summer School. Server Installation Guide for WA2.0.x(JB1.11.x) Versions. Server Installation Guide for WA1.0.x(JB1.11.x) Versions. Server Installation Guide for previous versions. Apollo Web Service API for 1.0 and older versions. Newer versions include web services in the help menu. Apollo set up instructions specific to the VM of GMOD in a Box . And from our SlideShare deck.

3

About Us - Apollo

http://genomearchitect.org/about

The Apollo project is a collaboration between Suzanna Lewis’s group at Lawrence Berkeley National Laboratory ( BBOP, the Berkeley Bioinformatics Open-source Projects group. In Ian Holmes’ group. At the University of California Berkeley, and Chris Elsik’s group. At the University of Missouri. Members Emeriti: Gregg Helt ( Genomancer Consulting. Ed Lee ( LinkedIn. Colin Diesh ( University of Missouri. Rob Buels ( Foundation Medicine. Justin Reese ( Genformatic. Mitch Skinner ( Pacific Biosciences.

4

Public Demo - Apollo

http://genomearchitect.org/demo

This Apollo demo is continuously in development and it may change at any time. This is a public demo, which grants anyone access to read and modify the data; this means that data might change at any point, even while you are perusing the demo, if someone else concurrently modifies the same annotation. There is no privacy with these data. The required login password credentials to access are: demo@demo.com demo. Begin exploring Apollo 2. To learn more about the software and its functionality.

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Public Demo - Apollo

http://genomearchitect.org/WebApolloDemo

2016 Genome Architect. Powered by Jekyll.

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smallchangebio.wordpress.com

July | 2016 | Small Change Bioinformatics

https://smallchangebio.wordpress.com/2016/07

Monthly Archives: July 2016. July 9, 2016. Notes: Bioinformatics Open Source Conference 2016 day 2 afternoon: developer tools and reproducible analyses. I’m at the 2016 Bioinformatics Open Source Conference (BOSC). Day 1 morning notes. X2013; Jennifer Gardy keynote on open data and infectious diseases, plus workflow development. Day 1 afternoon notes. X2013; Talks on standards and a panel on growing communities. Day 2 afternoon notes. Developer tools and libraries. Generates multi-page HTML and amanages ...

smallchangebio.wordpress.com

Brad Chapman | Small Change Bioinformatics

https://smallchangebio.wordpress.com/author/bcbio

Author Archives: Brad Chapman. July 9, 2016. Notes: Bioinformatics Open Source Conference 2016 day 2 afternoon: developer tools and reproducible analyses. I’m at the 2016 Bioinformatics Open Source Conference (BOSC). Day 1 morning notes. X2013; Jennifer Gardy keynote on open data and infectious diseases, plus workflow development. Day 1 afternoon notes. X2013; Talks on standards and a panel on growing communities. Day 2 afternoon notes. Developer tools and libraries. Generates multi-page HTML and amanage...

github.com

GitHub - GMOD/Apollo: Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

https://github.com/GMOD/Apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin. Use Git or checkout with SVN using the web URL. Revert-790-sequence alteration comments fix. Split merge history 588. Webapollo v.2012-12-21.2. Aug 9, 2016. Failed to load latest commit information. Fix full screen 1195 (. Aug 9, 2016. Aug 9, 2016. Got a working clone. Mar 15, 2016. Handles the case where delete a squence alteration does not trigger a. Aug 9, 2016. May 4, 2016.

smallchangebio.wordpress.com

Notes: Bioinformatics Open Source Conference 2016 day 2 afternoon: developer tools and reproducible analyses | Small Change Bioinformatics

https://smallchangebio.wordpress.com/2016/07/09/bosc2016day2b

Notes: Bioinformatics Open Source Conference 2016 day 2 morning: Open research and data science. July 9, 2016. Notes: Bioinformatics Open Source Conference 2016 day 2 afternoon: developer tools and reproducible analyses. I’m at the 2016 Bioinformatics Open Source Conference (BOSC). Day 1 morning notes. X2013; Jennifer Gardy keynote on open data and infectious diseases, plus workflow development. Day 1 afternoon notes. X2013; Talks on standards and a panel on growing communities. Day 2 afternoon notes.

smallchangebio.wordpress.com

Notes: Bioinformatics Open Source Conference 2015 day 1 morning — Holly Bik and Data Science | Small Change Bioinformatics

https://smallchangebio.wordpress.com/2015/07/10/bosc2015day1a

Notes: Bioinformatics Open Source Conference 2014 day 2: Philip Bourne, Software Interoperability, Open Science. Notes: Bioinformatics Open Source Conference 2015 day 1 afternoon — Standards, Interoperability and Diversity Panel →. July 10, 2015. Notes: Bioinformatics Open Source Conference 2015 day 1 morning — Holly Bik and Data Science. I’m at the 2015 Bioinformatics Open Source Conference (BOSC). Holly Bik – Bioinformatics: Still a scary world for biologists. In September of 2010. She then describ...

blog.abigailcabunoc.com

Biocuration 2014: Battle of the new curation methods

http://blog.abigailcabunoc.com/biocuration-2014-battle-of-the-new-curation-methods

Abigail Cabunoc Mayes is writing on the Svbtle. April 16, 2014. Biocuration 2014: Battle of the new curation methods. Biocuration is incredibly important to progress in science. The process of sorting through and annotating scientific data to make it available and searchable to the public is at the heart of the ideas behind open science. I work at WormBase. Because I believe in its mission to curate our knowledge of nematode biology to make it freely available to the scientific community. We need to look...

embl-abr.org.au

Genome Annotation Platform - EMBL-ABR

https://www.embl-abr.org.au/annotation

Wheat Genome Annotation Platform. New genomes are being sequenced at an increasing rate, including genomes of unique and valuab. Le Australian species. However, much of the value of a genome assembly comes from identify. Ing where the important features are: the genes, splice variants, repetitive regions, and small RNAs. This process, called ‘annotation’, can be very time-consuming, requiring careful attention. Automated annotation approaches need manual curation and annotation. Which fulfils these crite...

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Apollo - Apollo

First instantaneous, collaborative genomic annotation editor available on the Web. Apollo is designed to support geographically dispersed researchers, and the work of a distributed community is coordinated through automatic synchronization: all edits in one client are instantly pushed to all other clients, allowing users to see annotation updates from collaborators in real-time during the editing process. There are no installation requirements for Annotators! Try Apollo on our Public Demo. Gene Ontology ...

genomearchitect.org

Apollo - Apollo

First instantaneous, collaborative genomic annotation editor available on the Web. Apollo is designed to support geographically dispersed researchers, and the work of a distributed community is coordinated through automatic synchronization: all edits in one client are instantly pushed to all other clients, allowing users to see annotation updates from collaborators in real-time during the editing process. There are no installation requirements for Annotators! Try Apollo on our Public Demo. Gene Ontology ...

genomearchitect.readthedocs.io

Apollo — Apollo 2.0.4 documentation

Quick-start Developer’s guide. How to contribute code to Apollo. Example Build Script on Unix with MySQL. Apollo - An instantaneous, collaborative, genome annotation editor. The application’s technology stack includes a Grails-based Java web application with flexible database backends and a Javascript client that runs in a web browser as a JBrowse plugin. You can find the latest release here: https:/ github.com/GMOD/Apollo/releases/latest. Quick-start Developer’s guide. Nodejs / NPM / Bower. How to contr...

genomearchitecture.com

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The main theme of our research is to understand how gene regulation and genome organization tie in with each other. The Lab Notes. Are the latest headlines from the lab, featuring a collection of random thoughts and useful code snippets. What are lab retreats for? Guillaume tests the three egg-protecting devices that the brave scientists of our team made, using only A4 paper, tape, toilet paper, and a cloth. So you want to do ChIP-seq huh? Bioinformaticians think about algorithms, they discuss analyses a...

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Main Page - Genomeart.com

Retrieved from " http:/ Genomeart.com/index.php/Main Page. Related Links [ Edit. This page was last modified on 26 November 2009, at 02:31. This page has been accessed 19,237 times. Content is available under.

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Main Page - Genomeart.org

Getting your own Genome. Possible genomic diseases of you. Storing your genome in you PC. Viewing your genetics family. A brief guide to genomics from NHGRI. Interesting things in your Genome. Compare your genome with other peoples. The principle of universal genome. Genomics Major Paper Publication. Your writing contribution to Genomics. Daphnia Genomics Consortium (DGC). Rice Genome at BGI China. TigerGenome Project by PGI Korea. Retrieved from " http:/ Genomeart.org/index.php/Main Page.