GENOMETRAFAC.CCHMC.ORG

GenomeTraFaC

A comparative genomics-based resource for initial characterization of gene models and. The identification of putative cis-regulatory regions of RefSeq Gene Orthologs. Element clusters within BlastZ Alignments. Element clusters within BlastZ-identified conserved sequence alignment blocks. Elements shared between any gene pair. Elements between user-selected gene segment pairs. Genome-wide ortholog conserved Cis-element module search. If you publish results obtained using GenomeTrafac, please cite.

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GenomeTraFaC | genometrafac.cchmc.org Reviews

<META> DESCRIPTION

A comparative genomics-based resource for initial characterization of gene models and. The identification of putative cis-regulatory regions of RefSeq Gene Orthologs. Element clusters within BlastZ Alignments. Element clusters within BlastZ-identified conserved sequence alignment blocks. Elements shared between any gene pair. Elements between user-selected gene segment pairs. Genome-wide ortholog conserved Cis-element module search. If you publish results obtained using GenomeTrafac, please cite.

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1 genometrafac

2 genes

3 supplementary

4 disclaimer

5 find conserved cis

6 find shared cis

7 conserved cis

8 element scanner

9 note

10 terms of use

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GenomeTraFaC | genometrafac.cchmc.org Reviews

https://genometrafac.cchmc.org

A comparative genomics-based resource for initial characterization of gene models and. The identification of putative cis-regulatory regions of RefSeq Gene Orthologs. Element clusters within BlastZ Alignments. Element clusters within BlastZ-identified conserved sequence alignment blocks. Elements shared between any gene pair. Elements between user-selected gene segment pairs. Genome-wide ortholog conserved Cis-element module search. If you publish results obtained using GenomeTrafac, please cite.

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genometrafac.cchmc.org

1

GenomeTraFaC

https://genometrafac.cchmc.org/genome-trafac/pipMakerJob;jsessionid=8132036BA6BF83505329D5D06D6D8756

Clusters within BlastZ alignment: Select the Sequence(s). Clusters within BlastZ alignment: Select the Sequence(s)" /. Search by disease, gene ontology, pathway, gene family, or custom groups. Clusters within BlastZ alignment: Select the Sequence(s)" /. Disease (Always use Disease Selector. Pathway (Always use Pathway Selector. Gene ontology (Always use Ontology Selector. Mammalian phenotype (Always use Phenotype Selector. A disintegrin and metalloproteinase with thrombospondin motifs. Bates E16 P1 Int.

2

GenomeTraFaC

https://genometrafac.cchmc.org/genome-trafac/index.jsp;jsessionid=8132036BA6BF83505329D5D06D6D8756

A comparative genomics-based resource for initial characterization of gene models and. The identification of putative cis-regulatory regions of RefSeq Gene Orthologs. Element clusters within BlastZ Alignments. Element clusters within BlastZ-identified conserved sequence alignment blocks. Elements shared between any gene pair. Elements between user-selected gene segment pairs. Genome-wide ortholog conserved Cis-element module search. If you publish results obtained using GenomeTrafac, please cite.

3

GenomeTraFaC

https://genometrafac.cchmc.org/genome-trafac/about.jsp;jsessionid=8132036BA6BF83505329D5D06D6D8756

GenomeTraFaC is a database of conserved regulatory elements obtained by systematically analyzing the orthologous set of human and mouse genes. It mainly focuses on all of the high-quality mRNA entries of mouse and human genes in the Reference Sequence. RefSeq) database of the NCBI. The identification of conserved potential cis-regulatory regions was done in a computational pipeline fashion using an advanced version of our earlier developed TraFaC. Developed by the Division of BioMedical Informatics.

4

GenomeTraFaC

https://genometrafac.cchmc.org/genome-trafac/disclaimer.jsp;jsessionid=8132036BA6BF83505329D5D06D6D8756

All the annotations for TFBS-PWMs were obtained from Genomatix. Our web application is not meant to be a substitute for Genomatix and the services provided by them. For further details and annotations, please register at Genomatix. For a login account. Developed by the Division of BioMedical Informatics.

5

GenomeTraFaC

https://genometrafac.cchmc.org/genome-trafac/supplementary/index.jsp;jsessionid=8132036BA6BF83505329D5D06D6D8756

Estimating the extent of flanking region, relative to transcription start site, to screen for regulatory elements. Human-mouse orthologous miRNAs and their chromosomal positions (Build 35.1 and 36.1, Compilation date: Aug 6th,2006). Developed by the Division of BioMedical Informatics.

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biophilessurf.info

Databases, biophilessurf

http://biophilessurf.info/databases.html

To view Genome Centers and Databases at the NCBI. To view another exhaustive list of various databases and links to them. CORG: COmparative Regulatory Genomics. Non-coding DNA segments database. DNA Replication Origin Database. Biological sequence data disclosed in patents and published applications. PolymiRTS Database (Polymorphism in microRNA Target Site). A collection of naturally occurring DNA variations in putative microRNA target sites. Database for pseudogene annotation. TAndem Splice Site DataBase.

anil.cchmc.org

List of Projects | Anil Jegga

https://anil.cchmc.org/projects

To achieve my research goals, I use genomics (functional and comparative) and computational biology tools (bioinformatic approaches). Here's a list of our efforts - including past and current, and also those in pipeline. In-house developed and published online databases and servers. Http:/ trafac.cchmc.org. Http:/ info.cchmc.org/help/trafac/index.html. Jegga et al., 2002. Citing articles via Google Scholar. Http:/ cismols.cchmc.org. Http:/ info.cchmc.org/help/cismols/index.html. Jegga et al., 2005. Web-a...

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genometrafac.cchmc.org

GenomeTraFaC

A comparative genomics-based resource for initial characterization of gene models and. The identification of putative cis-regulatory regions of RefSeq Gene Orthologs. Element clusters within BlastZ Alignments. Element clusters within BlastZ-identified conserved sequence alignment blocks. Elements shared between any gene pair. Elements between user-selected gene segment pairs. Genome-wide ortholog conserved Cis-element module search. If you publish results obtained using GenomeTrafac, please cite.

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