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Genomicron

Brand new DAP gives Mattick a run for his money. By T Ryan Gregory, on January 11th, 2017. Check out this brand new dog’s ass plot. DAP) Note that the only labels on the x-axis are the genomes of the different species — yet the points are connected on the line as though there was an actual transition between these modern species. Wow Just… wow. How does this sort of thing get past peer review? How do figures like these get drawn in the first place? Human males are bigger than females because…. 8211; Mate...

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Brand new DAP gives Mattick a run for his money. By T Ryan Gregory, on January 11th, 2017. Check out this brand new dog’s ass plot. DAP) Note that the only labels on the x-axis are the genomes of the different species — yet the points are connected on the line as though there was an actual transition between these modern species. Wow Just… wow. How does this sort of thing get past peer review? How do figures like these get drawn in the first place? Human males are bigger than females because…. 8211; Mate...
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Genomicron | genomicron.evolverzone.com Reviews

https://genomicron.evolverzone.com

Brand new DAP gives Mattick a run for his money. By T Ryan Gregory, on January 11th, 2017. Check out this brand new dog’s ass plot. DAP) Note that the only labels on the x-axis are the genomes of the different species — yet the points are connected on the line as though there was an actual transition between these modern species. Wow Just… wow. How does this sort of thing get past peer review? How do figures like these get drawn in the first place? Human males are bigger than females because…. 8211; Mate...

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1

Quotes of interest « Genomicron

http://www.genomicron.evolverzone.com/tag/quotes-of-interest

Quotes of interest — Brenner (1990) and discussion. By T Ryan Gregory, on December 19th, 2014. Mattick on transposable element function. By T Ryan Gregory, on July 25th, 2010. John Mattick, University of Queensland, is one of the leading proponents of the idea that much — perhaps most — of the human genome is functional. He has been making claims along these lines for at least 15 years, but seems to always present it as a new idea. Readers of this blog may […]. Quotes of interest - ERVs. I discussed the ...

2

Writing « Genomicron

http://www.genomicron.evolverzone.com/category/writing

New podcast on scientific writing coming soon! By T Ryan Gregory, on July 24th, 2015. I am currently developing a new podcast that will focus on scientific writing, including tips, strategies, interviews, discussions, Q&A, and other good stuff. If you are a student, postdoc, or even a seasoned writer, there should be something for you! If you would like to be notified when the podcast is set to launch, […]. I am an evolutionary biologist specializing in genome size evolution at the University of Guelph.

3

Clearly, the purpose of genome sequencing is to “provide insights”. « Genomicron

http://www.genomicron.evolverzone.com/2014/12/clearly-the-purpose-of-genome-sequencing-is-to-provide-insights

Laquo; Revealing stuff through genome sequencing. Were introns immediately dismissed as useless junk? Clearly, the purpose of genome sequencing is to “provide insights”. By T Ryan Gregory, on December 14th, 2014. Amemiya, C. T., et al. (2013). “The African coelacanth genome provides insights. Into tetrapod evolution.” Nature 496(7445): 311-316. Anderson, I., et al. (2011). “Novel Insights. Into the Diversity of Catabolic Metabolism from Ten Haloarchaeal Genomes.” PloS one 6(5). Bannantine, J. P.,...Berth...

4

Quotes of interest — Brenner (1990) and discussion. « Genomicron

http://www.genomicron.evolverzone.com/2014/12/quotes-of-interest-brenner-1990-and-discussion

Laquo; This one has it all! Genome Sequence Paper Title Generator. Quotes of interest — Brenner (1990) and discussion. By T Ryan Gregory, on December 19th, 2014. Is a well-known figure in genetics, having made major contributions to our understanding of gene function and establishing Caenorhabditis elegans. In small viruses to 4 Gb (gigabase, 10. In the human genome, and with bacterial genomes at the geometrical average of about 4 Mb (megabases, 106). The nematode has about 100 megabases and the. Has mor...

5

Quotes of interest — Ohno (1973) and discussion. « Genomicron

http://www.genomicron.evolverzone.com/2008/02/quotes-of-interest-ohno-1973-and

Laquo; Quotes of interest — Alu. Junk DNA — the quotes of interest series. Quotes of interest - Ohno (1973) and discussion. By T Ryan Gregory, on February 21st, 2008. By referring directly to the primary literature from the relevant period of the 1970s and ’80s. (Notably, creationists seem to think the discussion of the topic began in the 1990s, which is the only way they can argue that “intelligent design” predicted function when “Darwinists” rejected it). EVANS: Dr. Ohno, I suppose the take-home me...

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Quintessence of Dust: New limbs from old fins, part 3

http://sfmatheson.blogspot.com/2011/09/new-limbs-from-old-fins-part-3.html

New limbs from old fins, part 3. The third installment of my series at BioLogos. Is now up. It discusses the developmental mechanisms that underlie the construction of limbs, and the striking fact that these mechanisms are the same ones used to construct fish fins. Watch for an appearance by Sonic Hedgehog. Posted by Stephen Matheson. Please review my Rules and policies. For contact details, including an anonymous comment form that works all the time. New limbs from old fins, part 3. Darwin's Tree of Life.

sfmatheson.blogspot.com sfmatheson.blogspot.com

Quintessence of Dust: New limbs from old fins, part 1

http://sfmatheson.blogspot.com/2011/09/new-limbs-from-old-fins-part-1.html

New limbs from old fins, part 1. Last month, I started a series on the topic of limb evolution. Here at Quintessence of Dust. That series has been transformed (through a series of intermediates) into a series of posts. At the BioLogos site. The first installment is now up, and it provides an expanded introduction to the topic and a little historical context. Subsequent posts will tackle fossils, developmental biology, genetics, the explanatory role of design, and related themes. Posted by Stephen Matheson.

sfmatheson.blogspot.com sfmatheson.blogspot.com

Quintessence of Dust

http://sfmatheson.blogspot.com/2014/12/december-2014-update-quintessence-of.html

December 2014 update: Quintessence of Dust. Is on a long-term hiatus, but I haven't closed it down just yet. I have some new writing projects in various stages of planning, in collaboration with some old friends. See my About page. For information about me and the blog, including current contact information. Posted by Stephen Matheson. Please review my Rules and policies. For contact details, including an anonymous comment form that works all the time. December 2014 update: Quintessence of Dust. Ed Yong ...

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Quintessence of Dust: August 2011

http://sfmatheson.blogspot.com/2011_08_01_archive.html

Molecular evolution: improve a protein by weakening it. In the cartoon version of evolution that is often employed by critics of the theory, a new protein (B) can arise from an ancestral version (A) by stepwise evolution only if each of the intermediates between A and B are functional in some way (or at least not harmful). This sounds reasonable enough, and its a good starting point for basic evolutionary reasoning. In work just published by Joe Thorntons lab. Posted by Stephen Matheson. Was a milestone ...

amateurbiologyblog.overtexplorations.com amateurbiologyblog.overtexplorations.com

Picavet suspension and pole mapping | Amateur Biology Blog

http://amateurbiologyblog.overtexplorations.com/picavet-suspension-and-pole-mapping

A look at biological problems. Developmental Plasticity And Evolution. Picavet suspension and pole mapping. April 21, 2015. My first kite flight had many stabillity problems. In order to give my camera better stability when hanging from a kite, I built a Picavet. Suspension. Pierre Picavet was a French inventor, balloonist and kite enthusiast who created this suspension in 1912. The idea is that no matter how the kite moves, the camera will stay stable as the rigging slides back and forth. April 30, 2016.

cephalove.blogspot.com cephalove.blogspot.com

Cephalove: Pass the clams, please: A strategy for object retrieval in the octopus.

http://cephalove.blogspot.com/2010/07/pass-clams-please-strategy-for-object.html

A blog documenting my intellectual love affair with our many-armed friends. Tuesday, July 27, 2010. Pass the clams, please: A strategy for object retrieval in the octopus. I recently blogged about a line of research on octopus reaching movements. But I left out an important study for time's sake. I promised to cover it promptly, and so I'm making good on that promise here. To recap:. The study I'll look at today is Octopuses Use a Human-like Strategy to Control Precise Point-to-Point Arm Movements. Cambr...

zombiemib.com zombiemib.com

Zombie MIB: March 2015

http://www.zombiemib.com/2015_03_01_archive.html

Men In Black' do exist. THEY just want you to think it is a movie. Dissecting the Conspiracy Theories, Survival Scams, Government Disinformation and Propaganda. March 31, 2015. The Talking Dead - The Talking Dead #213: Conquer. I instantly thought of this bit when Morgan fought the Wolves. The Talking Dead - The Talking Dead #213: S5E16 – “Conquer”. Links to this post. March 28, 2015. The Ballad of PORCHDICK (Walking Dead Season 5). Links to this post. March 23, 2015. Links to this post. March 22, 2015.

darwinsdoubtreviews.blogspot.com darwinsdoubtreviews.blogspot.com

Darwin's Doubt Critical Reviews: Luskin’s Hopeless Monster

http://darwinsdoubtreviews.blogspot.com/2013/09/luskins-hopeless-monster.html

Darwin's Doubt Critical Reviews. Saturday, September 7, 2013. Luskin’s Hopeless Monster. Nicholas Matzke, PhD. I’m checking in from the airport on the way back from Evolution 2013. For me, highlights of the meeting included presenting my BioGeoBEARS R package. And some Ph.D. results. We have reputations to uphold! Part of the reason for harmony was that Jerry recently blogged. Such nice things about my review. Before the book came out, and that I made up quotes of Meyer. Are crucial reading if you did no...

darwinsdoubtreviews.blogspot.com darwinsdoubtreviews.blogspot.com

Darwin's Doubt Critical Reviews: Meyer’s Mistake

http://darwinsdoubtreviews.blogspot.com/2013/09/meyers-mistake.html

Darwin's Doubt Critical Reviews. Saturday, September 7, 2013. Quite apart from any factual errors, about which I’m not at all qualified to judge, here is what seems to me to be Meyer’s fundamental logical error IMO:. Darwin’s Doubt, Chapter 2). He illustrates this by asking us to comparing this figure, which he says is what we do see:. With this (appallingly badly drawn) one:. Which he claims Darwin’s theory says we ought to see. Well, of course it does, Dr Meyer! You have just, in Chapter 2 of your fat ...

darwinsdoubtreviews.blogspot.com darwinsdoubtreviews.blogspot.com

Darwin's Doubt Critical Reviews: Doubting "Darwin's Doubt"

http://darwinsdoubtreviews.blogspot.com/2013/09/doubting-darwins-doubt.html

Darwin's Doubt Critical Reviews. Saturday, September 7, 2013. This question is the starting point for a new book that aims to rekindle the “intelligent design” movement. “Darwin’s Doubt,” by Stephen Meyer, which will début at No. 7. On the New York. That intelligent design was religion, not science, and barred it from schools. Contains many well-documented counterexamples to Meyer’s argument, and the mechanisms by which life’s machinery can change quickly are well known. Whole genes can b...Most absurd o...

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Molecular indexing enables quantitative targeted RNA sequencing and reveals poor efficiencies in standard library preparations. Development and validation of a next-generation sequencing-based protocol for 24-chromosome aneuploidy screening of embryos. To validate a next-generation sequencing (NGS)-based method for 24-chromosome aneuploidy screening and to investigate its applicability to preimplantation ge. NucleoMag 96 Plant (24x96). Most Popular Products in. Zephyr Compact Liquid Handler.

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Molecular indexing enables quantitative targeted RNA sequencing and reveals poor efficiencies in standard library preparations. Development and validation of a next-generation sequencing-based protocol for 24-chromosome aneuploidy screening of embryos. To validate a next-generation sequencing (NGS)-based method for 24-chromosome aneuploidy screening and to investigate its applicability to preimplantation ge. Most Popular Products in. Zephyr Compact Liquid Handler. NucleoMag 96 Plant (24x96).

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Genomicron

Brand new DAP gives Mattick a run for his money. By T Ryan Gregory, on January 11th, 2017. Check out this brand new dog’s ass plot. DAP) Note that the only labels on the x-axis are the genomes of the different species — yet the points are connected on the line as though there was an actual transition between these modern species. Wow Just… wow. How does this sort of thing get past peer review? How do figures like these get drawn in the first place? Human males are bigger than females because…. 8211; Mate...

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genomics

Saturday, July 06, 2013. Fastq format converter in Fastx. Fastx is a useful tool for quality clipping, getting quality statistics etc. Just running with -i and -o parameters, it will complain if you have file in sanger fastq format. there is an undocumented parameter that takes the quality offset. For instance if you want to run a sanger fastq file, then do the following:. Fastx quality stats -i tmp -Q 33 -o tmp.out. But if the file is in Solexa format, then you dont have to specify the -Q option. Thursd...

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