phylogeny.fr
Phylogeny.fr: Downloads
http://www.phylogeny.fr/downloads.cgi
All software executables are freely available:. Réseau National des Génopoles 2003.
phylogeny.fr
Phylogeny.fr: "A la Carte" Mode
http://www.phylogeny.fr/alacarte.cgi
A la Carte Mode. Name of the analysis Name length is limited to 20 characters. Choose processing steps to run and select software to use:. MUSCLE Fastest and good accuracy. ProbCons High accuracy but lengthly computational time. T-Coffee Highest accuracy but lengthly computational time. ClustalW Less accurate than modern programs. Gblocks Using default parameters, Gblocks is more stringent than just removing positions with gaps. Construction of phylogenetic tree:. Parsimony Adapted to similar sequences.
phylogeny.fr
Phylogeny.fr: Mentions legales
http://www.phylogeny.fr/mentions.cgi
CNRS - Centre national de la recherche scientifique. 3, rue Michel-Ange. 75794 Paris cedex 16 - France. Téléphone: 33 1 44 96 40 00. Télécopie: 33 1 44 96 53 90. Directeur de la publication:. Directeur de la rédaction:. Administration technique du site:. Protection des informations nominatives. Pour exercer ce droit, vous pouvez vous adresser au webmaster:. Phylogeny.fr phylogeny@igs.cnrs-mrs.fr. Conservation des résultats: Ajout du 12 Mars 2015. Clause de non-responsabilité. Le site du CNRS est une &oel...
phylogeny.lirmm.fr
Phylogeny.fr: Your Workspace
http://phylogeny.lirmm.fr/phylo_cgi/workspace.cgi
ATV (A Tree Viewer). Your browser must support cookies). Create a new account. All stages have same color ( enable stages colorations. Page width is adjusted by the web browser ( use static page width. Tooltips are displayed when mouse cursor moves over an item ( disable tooltips. Réseau National des Génopoles 2003.
phylogeny.lirmm.fr
Phylogeny.fr: Mentions legales
http://phylogeny.lirmm.fr/phylo_cgi/mentions.cgi
ATV (A Tree Viewer). CNRS - Centre national de la recherche scientifique. 3, rue Michel-Ange. 75794 Paris cedex 16 - France. Téléphone: 33 1 44 96 40 00. Télécopie: 33 1 44 96 53 90. Directeur de la publication:. Directeur de la rédaction:. Administration technique du site:. Protection des informations nominatives. Pour exercer ce droit, vous pouvez vous adresser au webmaster. Clause de non-responsabilité. Propriété intellectuelle. La mise en place de liens hypertextes par des tiers vers des pages ou des...
phylogeny.fr
Phylogeny.fr: "Advanced" Mode
http://www.phylogeny.fr/advanced.cgi
Name of the analysis Name length is limited to 20 characters. Choose processing steps to run:. Construction of phylogenetic tree: PhyML. Visualisation of phylogenetic tree: TreeDyn. All at once Set the parameters before, and run the whole process. Step by step Control/validate the results of each program before going through the next step. Réseau National des Génopoles 2003.
phylogeny.lirmm.fr
Phylogeny.fr: Documentation
http://phylogeny.lirmm.fr/phylo_cgi/documentation.cgi
ATV (A Tree Viewer). 21 One Click mode. 23 A la carte mode. 3 Blast: Sequence explorer. 4 Programs use and technical details. 6 More information about external softwares. The Phylogeny.fr platform offers a phylogeny pipeline which can be executed through three main modes:. The One Click mode. Targets users that do not wish to deal with program and parameter selection. By default, the pipeline is already set up to run and connect programs recognized for their accuracy and speed ( MUSCLE. 21 One Click mode.
phylogeny.fr
Phylogeny.fr: Home
http://www.phylogeny.fr/index.cgi
Robust Phylogenetic Analysis For The Non-Specialist. Is a free, simple to use web service dedicated to reconstructing and analysing phylogenetic relationships between molecular sequences. Runs and connects various bioinformatics programs to reconstruct a robust phylogenetic tree from a set of sequences. If you use this site, please cite:. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. ( PubMed. BMC Evol Biol. 2010 Jan 12;10:8. ( PubMed. Explore your sequence neighbors. This ...
phylogeny.lirmm.fr
Phylogeny.fr: Format conversion
http://phylogeny.lirmm.fr/phylo_cgi/data_converter.cgi
ATV (A Tree Viewer). Upload your data file:. Or paste your raw data here (load example of sequences. Data nature (single sequence, set of sequences, alignment, tree, matrix, .) and format are automatically recognized. If the input data is not recognized or if the conversion is not available for the selected output format, an error message will be displayed. New Hampshire Extanded Tree. Réseau National des Génopoles 2003.
phylogeny.fr
Phylogeny.fr: Your Workspace
http://www.phylogeny.fr/workspace.cgi
User accounts have been disabled due to limited space on our server. All stages have same color ( enable stages colorations. Page width is adjusted by the web browser ( use static page width. Tooltips are displayed when mouse cursor moves over an item ( disable tooltips. Réseau National des Génopoles 2003.