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GParc: GenePattern Module Archive

A repository and community where users can share and discuss their own GenePattern modules. Learn More ». Upload a module ». Show Most Recent Uploads. Converts acgh files to a tab-delimited format usable by Genomica. Apply a Gating-ML 2.0 file on an FCS data file (gate and/or transform list mode data). Runs ATARiS on RNAi reagent-level data. Runs ATARiS on RNAi reagent-level data. Annotates CpGs or windows. Performs statistical analysis on groups. Calculates CpG methylation correlation.

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GParc: GenePattern Module Archive | gparc.org Reviews

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A repository and community where users can share and discuss their own GenePattern modules. Learn More ». Upload a module ». Show Most Recent Uploads. Converts acgh files to a tab-delimited format usable by Genomica. Apply a Gating-ML 2.0 file on an FCS data file (gate and/or transform list mode data). Runs ATARiS on RNAi reagent-level data. Runs ATARiS on RNAi reagent-level data. Annotates CpGs or windows. Performs statistical analysis on groups. Calculates CpG methylation correlation.

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1 toggle navigation

2 upload a module

3 resources

4 gparc

5 browse modules

6 show all

7 acgh2tab

8 acgh

9 data format conversion

10 applygatingml2

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toggle navigation,upload a module,resources,gparc,browse modules,show all,acgh2tab,acgh,data format conversion,applygatingml2,flow cytometry,preprocess and utilities,ataris,rnai,bspipe,annotator,bisulfite sequencing,clustering,correlation,grouptest,beta

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GParc: GenePattern Module Archive | gparc.org Reviews

https://gparc.org

A repository and community where users can share and discuss their own GenePattern modules. Learn More ». Upload a module ». Show Most Recent Uploads. Converts acgh files to a tab-delimited format usable by Genomica. Apply a Gating-ML 2.0 file on an FCS data file (gate and/or transform list mode data). Runs ATARiS on RNAi reagent-level data. Runs ATARiS on RNAi reagent-level data. Annotates CpGs or windows. Performs statistical analysis on groups. Calculates CpG methylation correlation.

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gparc.org

1

GParc: GenePattern Module Archive

http://www.gparc.org/docs/urn:lsid:8080.genepattern.50.16.2.219:genepatternmodules:9:4

Converts acgh files to a tab-delimited format usable by Genomica. Acgh input file *. The input file in aCGH format to be converted into TAB format for use in Genomica. A file containing the list of gene identifiers to be considered present. A file containing the list of gene identifiers to be considered absent. A file containing gene locations in UCSC whole BED format, as downloaded from UCSC Table Browser (select all fields from select table, see below for details). 1 Acgh input file. A set of example b...

2

GParc: GenePattern Module Archive

http://www.gparc.org/view/urn:lsid:comics.georgiahealth.edu:genepatternmodules:253:1

Performs statistical analysis on groups. Comics on January 29, 2013 08:27. Comments About this Version (0). Comments About All Other Versions (0). There was an error saving your comment:. You cannot leave either the title, content or captcha fields blank when submitting a comment. Please try again. 2016 Broad Institute of MIT and Harvard.

3

GParc: GenePattern Module Archive

http://www.gparc.org/view/urn:lsid:comics.georgiahealth.edu:genepatternmodules:255:1

Performs statistical analysis on groups. Comics on January 29, 2013 08:29. Comments About this Version (0). Comments About All Other Versions (0). There was an error saving your comment:. You cannot leave either the title, content or captcha fields blank when submitting a comment. Please try again. 2016 Broad Institute of MIT and Harvard.

4

GParc: GenePattern Module Archive

http://www.gparc.org/view/urn:lsid:comics.georgiahealth.edu:genepatternmodules:254:1

Calculates CpG methylation correlation. Comics on January 29, 2013 08:28. Comments About this Version (0). Comments About All Other Versions (0). There was an error saving your comment:. You cannot leave either the title, content or captcha fields blank when submitting a comment. Please try again. 2016 Broad Institute of MIT and Harvard.

5

GParc: GenePattern Module Archive

http://www.gparc.org/view/urn:lsid:comics.georgiahealth.edu:genepatternmodules:252:1.1

Annotates CpGs or windows. Comics on August 04, 2013 01:00. Comments About this Version (0). Comments About All Other Versions (0). There was an error saving your comment:. You cannot leave either the title, content or captcha fields blank when submitting a comment. Please try again. 2016 Broad Institute of MIT and Harvard.

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GParc: GenePattern Module Archive

A repository and community where users can share and discuss their own GenePattern modules. Learn More ». Upload a module ». Show Most Recent Uploads. Converts acgh files to a tab-delimited format usable by Genomica. Apply a Gating-ML 2.0 file on an FCS data file (gate and/or transform list mode data). Runs ATARiS on RNAi reagent-level data. Runs ATARiS on RNAi reagent-level data. Annotates CpGs or windows. Performs statistical analysis on groups. Calculates CpG methylation correlation.

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