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graph genomics – G-Genomics Bioinformatics Blog | graphgenomics.com Reviews
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CompSci – graph genomics
https://graphgenomics.com/category/compsci
New work from Tufts showing that a planaria proteome computer model is able to ‘explain’ induced phenotypes. They have shown that, given a set of elements describing the interactions between the proteins and their gene regulatory regions, the software is able to ‘reconstruct’ influence diagrams that ‘explain’ the observed phenotypes. How they did it:. 8220;We employed an evolutionary algorithm [ 114. June 9, 2015. June 9, 2015. All from Blog.lab49. Btw gotta love those russians TAPL. February 24, 2012.
Very exciting paper from Google (sort of) – graph genomics
https://graphgenomics.com/2015/04/26/very-exciting-paper-from-google
Very exciting paper from Google (sort of). April 26, 2015. May 7, 2015. In this paper, the authors apply deep learning to “virtual drug screening” and though the results are not exactly earth shattering, this application back-into-biology, is precisely what I think will keep happening. The paper: Massively Multitask Networks for Drug Discovery. Virtual screening of a drug library to find compounds that bind biologic targets (proteins). Nodes whose number corresponded to the number of datasets used, speci...
10x genomics new video – graph genomics
https://graphgenomics.com/2015/05/18/10x-genomics-new-video
10x genomics new video. May 18, 2015. September 3, 2015. Changing the Definition of Sequencing. The skinny: Your reduce the all-vs-all sequence assembly problem by tagging individual or molecules with either sequence or fluorescence tag. How do you tag a few molecules at a time in the soup that is a genome shotgun? The call of the wild. New work from Tufts showing that a planaria proteome computer model is able to ‘explain’ induced phenotypes. Leave a Reply Cancel reply. Enter your comment here.
Biotech – graph genomics
https://graphgenomics.com/category/biotech
Whole organism lineage tracing by combinatorial and cumulative genome editing. Http:/ biorxiv.org/content/biorxiv/early/2016/05/11/052712.full.pdf. A new paper from Jay Shendure’s lab describes a new technique c. This is one of those works that takes an already revolutionary technique and just vaults it even further. You used CRISPR/Cas9 to stick the mutagenesis cassette into a specific region of the cells’ genome, then you used the same technique to perform the mutagensis. June 3, 2016. Technology in wh...
DomSoochoo – graph genomics
https://graphgenomics.com/author/domsooch
Whole organism lineage tracing by combinatorial and cumulative genome editing. Http:/ biorxiv.org/content/biorxiv/early/2016/05/11/052712.full.pdf. A new paper from Jay Shendure’s lab describes a new technique c. This is one of those works that takes an already revolutionary technique and just vaults it even further. You used CRISPR/Cas9 to stick the mutagenesis cassette into a specific region of the cells’ genome, then you used the same technique to perform the mutagensis. June 3, 2016. April 27, 2016.
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Apache2 Ubuntu Default Page: It works
Apache2 Ubuntu Default Page. This is the default welcome page used to test the correct operation of the Apache2 server after installation on Ubuntu systems. It is based on the equivalent page on Debian, from which the Ubuntu Apache packaging is derived. If you can read this page, it means that the Apache HTTP server installed at this site is working properly. You should replace this file. Before continuing to operate your HTTP server. Package was installed on this server. Is always included from the main...
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graph genomics – G-Genomics Bioinformatics Blog
One of the best articles I have seen on Deep Learning in Biology. Https:/ www.biorxiv.org/content/early/2018/01/19/142760. In addition to being really comprehensive. This article is also written in a very unique way. They used something called manubot using a git archive for the collating of all the pieces for this article. In fact the whole article is hosted on github: https:/ github.com/greenelab/deep-review. February 13, 2018. February 13, 2018. ANN’s for Peptide-MHC Binding Prediction. June 3, 2016.
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