grassius.org

eglab.osu.edu

Regulatory Specificity of R2R3 MYB Transcription Factors | Grotewold Lab

https://eglab.osu.edu/projects/regulatory-specificity-r2r3-myb-transcription-factors

Skip to main content. Ohio State nav bar. Skip to main content. The Ohio State University. The Ohio State University. Regulatory Specificity of R2R3 MYB Transcription Factors. Regulatory Specificity of R2R3 MYB Transcription Factors. May 6, 2015. The control of branched flavonoid pathways in maize as a case study. The anthocyanin branch of the flavonoid pathway is regulated by the R2R3-MYB. Which can only activate its target genes in the presence of the bHLH. The lab is now targeting R as a main player i...

arabidopsis.med.ohio-state.edu

:: AGRIS Download Page::

http://arabidopsis.med.ohio-state.edu/downloads.html

We provide free download of Arabidopsis thaliana cis-regulatory database (AtcisDB) and transcription factor database (AtTFDB). You have to register yourself to download the data. Click here to register. If you are already registered please login below to download AGRIS data. Currently, following files are available for download:. Files available for download. Complete data set for Arabidopsis thaliana. Complete data set for Arabidopsis thaliana. Complete data set for Arabidopsis thaliana.

arabidopsis.med.ohio-state.edu

:: AGRIS Links::

http://arabidopsis.med.ohio-state.edu/links.html

Arabidopsis Information Portal (AIP). The Arabidopsis Information Resource (TAIR) provides a comprehensive resource for the scientific community working with Arabidopsis thaliana, a widely used model plant. TIGR's Genome Projects are a collection of curated databases containing DNA and protein sequence, gene expression, cellular role, protein family, and taxonomic data for microbes, plants and humans. The mission of the ABRC is to acquire, preserve and distribute seed and DNA resources that are useful to...

arabidopsis.med.ohio-state.edu

:: AGRIS Publications::

http://arabidopsis.med.ohio-state.edu/publications.html

Eunkyoo Oh, Jia-Ying Zhu and Zhi-Yong Wang (2012). Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses. Vol: 14 Num: 8. Yilmaz A., Mejia-Guerra MK., Kurz K., Liang X., Welch L., Grotewold E. (2011). AGRIS: Arabidopsis Gene Regulatory Information Server,an update. Lichtenberg, J., Yilmaz, A., Welch, J.D., Kurz, K., Liang, X., Drews, F., Ecker, K., Lee, S.S., Geisler, M., Grotewold, E., Welch, L.R. (2009). AGRIS and AtRegNet: A platform to link cis.

plntfdb.bio.uni-potsdam.de

Plant Transcription Factor database - Universitaet Potsdam

http://plntfdb.bio.uni-potsdam.de/v3.0/links.php

The National Center for Biotechnology Informacion, NCBI, creates public databases, conducts research in computational biology, develops software tools for analyzing genome data, and disseminates biomedical information - all for the better understanding of molecular processes affecting human health and disease. Sheen's laboratory is interested in the elucidation of molecular mechanisms underlying plant responses to growth and stress hormones, nutrients, environmental stresses, and pathogens. PLACE is a da...

arabidopsis.med.ohio-state.edu

:: AGRIS Arabidopsis thaliana Words::

http://arabidopsis.med.ohio-state.edu/words

This section can be used to find out frequencies of 5 to 15 letter nucleotide sequences in non-coding segments of the Arabidopsis genome. Following non-coding segments are queried:. Core, proximal and distal promoter regions make up 3000 bp upstream region of a gene. Enter word (from 5 to 15 letters) to search:. Word count data is based on gene models from TAIR8. The assemblies in TAIR8 and TAIR9 releases are nearly identical - Release notes. Please select an input type:. Enter your own sequence(s).

arabidopsis.med.ohio-state.edu

:: AGRIS AtcisDB - Arabidopsis cis-regulatory element database::

http://arabidopsis.med.ohio-state.edu/AtcisDB

AtcisDB - Arabidopsis cis. AtcisDB provides a comprehensive resource for the scientific community working with gene regulatory information of Arabidopsis thaliana. AtcisDB consists of a searchable relational database, which includes many different data types, such as transcription factor binding site information, promoter sequence and related annotations. The data can be viewed using the Generic Genome Browser. Regulatory element annotation for each gene can also be obtained. Ie Myb, At2g30420).

arabidopsis.med.ohio-state.edu

:: AGRIS Credits::

http://arabidopsis.med.ohio-state.edu/credits.html

Ms Twyla T. Pohar. Designed the new menu and redesigned the header for the AGRIS website. Dr Quail has kindly provided feedback for bHLH Family. Dr Laura has kindly provided feedback for MADS family. Dr Somssich has kindly provided feedback for WRKY Family. Dr Schuler provided us experimentally identified promoters for P450 promoters. Dr Dierk Wanke and Dr. Klaus Harter. Dr Wanke and Dr. Harter have kindly provided feedback for ARR-B family. Dr Wanke has kindly provided feedback for BBR/BPC family.

arabidopsis.med.ohio-state.edu

:: AGRIS Cite::

http://arabidopsis.med.ohio-state.edu/cite.html

How to Cite AGRIS. The development and curation of AGRIS is fully supported by NSF. To ensure the continuation of this resource, we need users to acknowledge this resource by citing. Yilmaz A, Mejia-Guerra MK, Kurz K, Liang X, Welch L, Grotewold E. AGRIS: Arabidopsis Gene Regulatory Information Server, an update. 2011 Jan, 39(Database issue):D1118-D1122. Palaniswamy SK, James S, Sun H, Lamb RS, Davuluri RV, Grotewold E. 2006 Mar, 140(3):818-29. Elements and transcription factors. 2003 Jun, 4(1):25.

arabidopsis.med.ohio-state.edu

:: AGRIS AtTFDB : Transcription Factor Families::

http://arabidopsis.med.ohio-state.edu/AtTFDB

AtTFDB - Arabidopsis transcription factor database. AtTFDB is a comprehensive and public Arabidopsis TF database. The criteria employed for TF identification was described in Davuluri et al., 2003. And Palaniswamy et al., 2006. The sequence of the TFs currently in AtTFDB corresponds to the most current release of the Arabidopsis genome in TAIR (TAIR9). From this page, users may search the database for TFs in two ways:. A) By utilizing a specific LocusID. Search for a transcription factor.