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gretel — Gretel 0.0.1a documentation

A (work-in-progress) algorithm for recovering haplotypes from metagenomes. Sister to Hansel. Pip install numpy hanselx pysam PyVCF matplotlib. Misbehaves somewhat when you attempt to install it in a fashion that isolates it from the system packages, to get around this one can cheat and include the system packages in the. Virtualenv gretel - system-site-packages. Gretel bam vcf.gz contig -e 1-end - master master.fa. To plot some graphs given a known FASTA of haplotypes and the Gretel crumbs:. Free documen...

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gretel — Gretel 0.0.1a documentation | gretel.readthedocs.io Reviews

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A (work-in-progress) algorithm for recovering haplotypes from metagenomes. Sister to Hansel. Pip install numpy hanselx pysam PyVCF matplotlib. Misbehaves somewhat when you attempt to install it in a fashion that isolates it from the system packages, to get around this one can cheat and include the system packages in the. Virtualenv gretel - system-site-packages. Gretel bam vcf.gz contig -e 1-end - master master.fa. To plot some graphs given a known FASTA of haplotypes and the Gretel crumbs:. Free documen...

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gretel — Gretel 0.0.1a documentation | gretel.readthedocs.io Reviews

https://gretel.readthedocs.io

A (work-in-progress) algorithm for recovering haplotypes from metagenomes. Sister to Hansel. Pip install numpy hanselx pysam PyVCF matplotlib. Misbehaves somewhat when you attempt to install it in a fashion that isolates it from the system packages, to get around this one can cheat and include the system packages in the. Virtualenv gretel - system-site-packages. Gretel bam vcf.gz contig -e 1-end - master master.fa. To plot some graphs given a known FASTA of haplotypes and the Gretel crumbs:. Free documen...

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Index — Gretel 0.0.1a documentation

http://gretel.readthedocs.io/en/latest/genindex.html

Append path() (in module gretel.gretel). Generate path() (in module gretel.gretel). Load fasta() (in module gretel.util). Load from bam() (in module gretel.util). Main() (in module gretel.cmd). Process bam() (in module gretel.gretel). Process vcf() (in module gretel.gretel). Reweight hansel from path() (in module gretel.gretel). Provided by Read the Docs. On Read the Docs. Free document hosting provided by Read the Docs.

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Python Module Index — Gretel 0.0.1a documentation

http://gretel.readthedocs.io/en/latest/py-modindex.html

160; . 160; . 160; . Provided by Read the Docs. On Read the Docs. Free document hosting provided by Read the Docs.

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hansel.readthedocs.io

Hansel — Hansel 0.0.5a documentation

http://hansel.readthedocs.io/en/develop

A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence. Brother to Gretel. What is it for? How is data stored? How does it work? Summarise Counts at Position. Provided by Read the Docs. On Read the Docs. Free document hosting provided by Read the Docs.

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gretel — Gretel 0.0.1a documentation

A (work-in-progress) algorithm for recovering haplotypes from metagenomes. Sister to Hansel. Pip install numpy hanselx pysam PyVCF matplotlib. Misbehaves somewhat when you attempt to install it in a fashion that isolates it from the system packages, to get around this one can cheat and include the system packages in the. Virtualenv gretel - system-site-packages. Gretel bam vcf.gz contig -e 1-end - master master.fa. To plot some graphs given a known FASTA of haplotypes and the Gretel crumbs:. Free documen...

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