greylag.org

greylag: software for tandem mass spectrum peptide identification

Greylag: software for tandem mass spectrum peptide identification. Greylag is a suite of programs for MS/MS peptide identification by sequence database search. It solves the same basic problem that programs such as SEQUEST. Greylag is Free Software, distributed under the GNU General Public License. Note that greylag is currently in a beta state. You're welcome to try it out, but be aware that there may still be some bugs and sharp edges. K 14, K 16, K 28). Greylag can simultaneously search alternate pote...

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greylag: software for tandem mass spectrum peptide identification | greylag.org Reviews

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Greylag: software for tandem mass spectrum peptide identification. Greylag is a suite of programs for MS/MS peptide identification by sequence database search. It solves the same basic problem that programs such as SEQUEST. Greylag is Free Software, distributed under the GNU General Public License. Note that greylag is currently in a beta state. You're welcome to try it out, but be aware that there may still be some bugs and sharp edges. K 14, K 16, K 28). Greylag can simultaneously search alternate pote...

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1 mascot

2 tandem

3 ommsa

4 and myrimatch

5 caution

6 features

7 no arbitrary limits

8 user friendly notation

9 advanced search

10 mass regime

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mascot,tandem,ommsa,and myrimatch,caution,features,no arbitrary limits,user friendly notation,advanced search,mass regime,avg/mono,greylag rally,greylag chase,integral parallel capability,incremental search,emphasis on correctness,compatibility,document

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greylag: software for tandem mass spectrum peptide identification | greylag.org Reviews

https://greylag.org

Greylag: software for tandem mass spectrum peptide identification. Greylag is a suite of programs for MS/MS peptide identification by sequence database search. It solves the same basic problem that programs such as SEQUEST. Greylag is Free Software, distributed under the GNU General Public License. Note that greylag is currently in a beta state. You're welcome to try it out, but be aware that there may still be some bugs and sharp edges. K 14, K 16, K 28). Greylag can simultaneously search alternate pote...

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greylag.org

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Greylag Theory of Operation

http://www.greylag.org/theory-of-operation.html

Greylag Theory of Operation. Simplicity is prerequisite for reliability - Edsger W. Dijkstra. Use a high-level language where possible, with performance-critical portions implemented in a suitable low-level language. Create an implementation that is a tool for learning. The code should be easy to follow and easy to play around with and extend. Try to incorporate the best features from other existing search programs. Design for single-host and cluster parallelism. Choose, one by one, the candidate spectra...

2

Greylag Installation Guide

http://www.greylag.org/install.html

Building greylag requires Python. Version 2.5 or later, SWIG. 1331 or later, and reasonably recent versions of g and libstdc , and make. Recent Linux distributions will likely have sufficiently new versions, but you may have to install some of them. Under Ubuntu. Linux, this should suffice:. Sudo apt-get install python{,-dev} swig g make. If you also want to run the test suite and build the documentation, add:. For a standard compile, just use. Next, run the test suite:. Or you can use. If you wish to in...

3

Release Notes

http://www.greylag.org/release-notes.html

Version 0.2.2. Code variant. This is an adaptation of the greylag code to run the Yates' lab's SEQUEST binary. Although it may not be useful in itself, it contains a number of improvements that should be folded into the main greylag code. Version 0.2.1. Takes a set of SQT files and a FASTA database and reannotates the found peptides as if the search had been done against the specified database. (This is usually much faster than redoing the search.). Now has better charge alias handling. Now defaults to 1.

4

Greylag User Guide

http://www.greylag.org/user-guide.html

The basic workflow of greylag is as follows. First, a shuffled sequence database is prepared with. This generates a sequence database with one decoy sequence for each real sequence, which is required by. Then, the spectra are searched using. Which takes a configuration file and a set of spectrum files as input, and generates a glw file as output. Program connects to one or more. Programs running on the same or different hosts, and these worker programs do the actual search. The. Ls greylag.conf greyl...

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greylag: software for tandem mass spectrum peptide identification

Greylag: software for tandem mass spectrum peptide identification. Greylag is a suite of programs for MS/MS peptide identification by sequence database search. It solves the same basic problem that programs such as SEQUEST. Greylag is Free Software, distributed under the GNU General Public License. Note that greylag is currently in a beta state. You're welcome to try it out, but be aware that there may still be some bugs and sharp edges. K 14, K 16, K 28). Greylag can simultaneously search alternate pote...

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