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This WordPress.com site is the bee's knees
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gutstarch | This WordPress.com site is the bee's knees | gutstarch.wordpress.com Reviews
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This WordPress.com site is the bee's knees
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Lab meeting 10/08 | gutstarch
https://gutstarch.wordpress.com/2012/10/08/lab-meeting-1008
This WordPress.com site is the bee's knees. Meeting with Dr. Lamendella #2. PC ORD meeting 10/12 →. October 8, 2012. Otu table-otu vs. sample. Qiime to pc ord. Compare samples based on nmds. Pearson’s correlation- metadata correlated with nmds, vector direction. Quantify amount of target in sample. Things to do in future. Meeting on wednesday for figuring out ……. Meet with chesney, alex etc. This entry was posted in lab meeting. Meeting with Dr. Lamendella #2. PC ORD meeting 10/12 →. PC ORD meeting 10/12.
PC ORD meeting 10/12 | gutstarch
https://gutstarch.wordpress.com/2012/10/12/pc-ord-meeting-1012
This WordPress.com site is the bee's knees. Lab meeting 10/15 abstract →. PC ORD meeting 10/12. October 12, 2012. 2 correlation between nmds and bacterial profiles. Vector analysis pearson correlation. 3 ISA-indicator species analysis. Which species are characteristic of baseline and which correlate with glucose. Robust method, not just pretty picture. Pc ord makes data, cytoscape makes graphic. This entry was posted in lab meeting. Lab meeting 10/15 abstract →. Leave a Reply Cancel reply.
Lab meeting 10/29 | gutstarch
https://gutstarch.wordpress.com/2012/10/29/lab-meeting-1029
This WordPress.com site is the bee's knees. Lab meeting 11/12 →. October 29, 2012. Ideas for crowd sourcing. Turn in form and cc. Dr. L. Send abstract to Dr. L. Results from heatmapping and nmds. Nmds-not seeing clustering, either due to not being robust enough or just need a different type of visualization. Procrustes analysis through qiime. Look at literature for other ideas besides nmds. Analyze like crohns, profiles of 20 most abundant. This entry was posted in lab meeting. Lab meeting 11/12 →.
gutstarch | This WordPress.com site is the bee's knees | Page 2
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This WordPress.com site is the bee's knees. Newer posts →. Getting Acquainted with Data/QIIME interface. September 17, 2012. Andrew and I met at approximate 9:27PM to start exploring the QIIME online interface and get a better feel of the data that is generated by QIIME ( http:/ www.microbio.me/qiime/. We were able to download a .jnlp file after doing a test meta analysis and this file contains an OTU table. Using the tutorial here ( http:/ www.microbio.me/qiime/docs/tutorials/tutorial.html. What sample ...
PC-ORD:nMDS and R:heatmaps | gutstarch
https://gutstarch.wordpress.com/2012/10/29/pc-ordnmds-and-rheatmaps
This WordPress.com site is the bee's knees. Lab meeting 10/15 abstract. Lab meeting 10/29 →. October 29, 2012. PC-ORD Non-metric Multidimensional Scaling and Correlations. Imported Main Matrix “MM” sheet from “PCORD only Base.xlsx”. Imported Environmental “EM” sheet from “PCORD only Base.xlsx”. Ran analysis: Ordination NMS autopilot/Slow and thorough. Took about 20 min. No option to “Graph Ordination”. Graphed NMS Scree Plot. Not exactly sure what this represents. Graphed 2D ordination: Graph 2D. This sh...
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gutstarch | This WordPress.com site is the bee's knees
This WordPress.com site is the bee's knees. November 12, 2012. Figure out appropriate stats, look at papers and ask dr. Pelky. Meeting with Dr. Lamendella the last week before finals. Thursday, dec 6th meeting lamendella lab night. Paired presentation. October 29, 2012. Ideas for crowd sourcing. Turn in form and cc. Dr. L. Send abstract to Dr. L. Results from heatmapping and nmds. Nmds-not seeing clustering, either due to not being robust enough or just need a different type of visualization. This is a q...
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