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Vaughn Group

Keywords: Bioinformatics, Computational Genomics, Regulation of gene expression, Genome structure and evolution, DNA methylation, Genetic Redundancy, RNA interference, Quantitative Sequencing, Assembler Design and Optimization, Biological networks. Matthew Vaughn, PhD. Vishal Thapar, PhD. Global Analysis of Functional Domains of Plant Chromosomes. Understand how chromosome functions are spatially organized and coordinated in structural and functional domains. Functional Genomics of Plant Polyploids.

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Vaughn Group | hispaniola.cshl.edu Reviews

https://hispaniola.cshl.edu

Keywords: Bioinformatics, Computational Genomics, Regulation of gene expression, Genome structure and evolution, DNA methylation, Genetic Redundancy, RNA interference, Quantitative Sequencing, Assembler Design and Optimization, Biological networks. Matthew Vaughn, PhD. Vishal Thapar, PhD. Global Analysis of Functional Domains of Plant Chromosomes. Understand how chromosome functions are spatially organized and coordinated in structural and functional domains. Functional Genomics of Plant Polyploids.

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hispaniola.cshl.edu hispaniola.cshl.edu
1

Generic Genome Browser

http://hispaniola.cshl.edu/gbrowse2

Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. GBrowse documentation,...

2

A. arenosa sequencing project

http://hispaniola.cshl.edu/sequencing/aarenosa

A arenosa sequencing project. The polyploid (4n) Arabaidopsis (nee Cardaminopsis) arenosa. Genome is being sequenced as part of the Functional Genomics of Plant Polyploids. NSF Plant Genome Project # 0077774. We are using a combination of paired-end and mate-paired Illumina reads to sequence to an approximate depth of 25x. Assemblies will be generated using Velvet and comparative analyses to the Arabidopsis lyrata and thaliana genomes will be performed. Matt Vaughn (coPI, Assembly and informatics).

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Vaughn Group

Keywords: Bioinformatics, Computational Genomics, Regulation of gene expression, Genome structure and evolution, DNA methylation, Genetic Redundancy, RNA interference, Quantitative Sequencing, Assembler Design and Optimization, Biological networks. Matthew Vaughn, PhD. Vishal Thapar, PhD. Global Analysis of Functional Domains of Plant Chromosomes. Understand how chromosome functions are spatially organized and coordinated in structural and functional domains. Functional Genomics of Plant Polyploids.

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