HITSEQ.ORG

amanda-clare.blogspot.com

Amanda Clare: July 2015

http://amanda-clare.blogspot.com/2015_07_01_archive.html

Thursday, 30 July 2015. Was held in Dublin, just across the Irish Sea from us here in Aberystwyth. So off we went, to find out the latest research in bioinformatics. There were many parallel tracks, but the recurring themes of the talks I attended were:. Lots of work on human genomics, particularly disease, particularly cancer. Single cell analysis, finding variation (SNVs) from clonal populations, haplotype resolution. Reference sequences: most people were working with a reference rather than de-novo.

blog.gcollet.fr

bioinformatique - I'm stuck here

http://blog.gcollet.fr/category/bioinformatique

Aller à la recherche. Mercredi 30 octobre 2013. La reprise avec des algues. Par Guillaume Collet le mercredi 30 octobre 2013, 09:00. Après deux semaines de vendanges début octobre. et deux semaines de rhume à suivre, me revoilà d'attaque. ou presque. J'ai repris le boulot en allant présenter notre travail sur la reconstruction des réseaux métaboliques lors de la conférence annuelle IDEALG. Bref, c'est un projet très large et très ambitieux qui me plaît bien. Qui permet de calculer des statistiques sur un...

alkanlab.org

Alkan Lab

http://www.alkanlab.org/publications.html

Bioinformatics and Computational Genomics Group. Department of Computer Engineering, Bilkent University. Joint first or last authors are marked with * in case of equal contribution). Computational pan-genomics: status, promises and challenges. Epub Oct 21; doi: 10.1093/bib/bbw089], 2016. Inter-varietal structural variation in grapevine genomes. Maria Francesca Cardone, Pietro D'Addabbo, Can Alkan. Epub Jul 15; doi: 10.1111/tpj.13274], 2016. On Genomic Repeats and Reproducibility. Aug 1;32(15):2243-7, 2016.

blog.gcollet.fr

Le génie des k-mers - I'm stuck here

http://blog.gcollet.fr/post/Le-génie-des-k-mers

Aller à la recherche. 171; Retour sur Processing. La boîte de Pandore. Le génie des k-mers. Par Guillaume Collet le lundi 9 septembre 2013, 09:04 - bioinformatique. Aujourd'hui, j'ai envie de vous parler d'un article scientifique d'un ami que j'ai déjà évoqué ici : Rayan Chikhi. Rayan était en thèse dans la même équipe que moi et nous avons souvent eu l'occasion de discuter de pleins de sujets passionnants. Son dernier papier s'intitule Informed and automated k-mer size selection for genome assembly.

acgt.cs.tau.ac.il

Presentations

http://acgt.cs.tau.ac.il/group_presentations.php

Lectures about the group's work. Utilizing diverse omic data from many cancer studies: proof of concept and applications". TAU-University of Toronto joint workshop on Big-data and Health, Tel Aviv University, Tel Aviv, Israel, November 1-2, 2016. Modularity and classification through the network lens". Invited speaker, QNetS Workshop: What s new in networks? Building bridges between computational, mathematical and statistical network analysis, Ludwig-Maximilian Universitaet Munich,. October 5-7, 2016.

donut.cs.bilkent.edu.tr

Alkan Lab

http://donut.cs.bilkent.edu.tr/publications.html

Bioinformatics and Computational Genomics Group. Department of Computer Engineering, Bilkent University. Joint first or last authors are marked with * in case of equal contribution). Building and Improving Reference Genome Assemblies. Karyn Meltz Steinberg, Valerie A. Schneider. Can Alkan. Michael J. Montague, Wesley C. Warren, Deanna M. Church, Richard K. Wilson. Proceedings of the IEEE. Mar 3, 105(3): 422-435, 2017. Discovery of large genomic inversions using long range information. 88(4): 648-661, 2016.

wildtype.wordpress.com

ISMB/ECCB 2015: is iontach an taithí é | Wild Type

https://wildtype.wordpress.com/2015/07/26/ismbeccb-2015-is-iontach-an-taithi-e

Science related musings in their natural environment. ISMB/ECCB 2015: is iontach an taithí é. 26 July, 2015 in Uncategorized. Dublin was a fantastic setting for the joint meeting of ISMB and ECCB. 8211; a full five days packed with talks, discussion and networking starting with the SIGS ( BOSC. And others), Satellite Meetings ( CAMDA. And the main conference. While all of the science was excellent, a wonderful highlight was David Searls. Ulysses Map of Dublin. PDF) and Special issue of Bioinformatics.

langmead-lab.org

Publications |

http://www.langmead-lab.org/publications

LANGMEAD LAB @ JHU. LANGMEAD LAB @ JHU. Nellore A, Jaffe AE, Fortin JP, Alquicira-Hernández J, Collado-Torres L, Wang S, Phillips RA, Karbhari N, Hansen KD, Langmead B, Leek JT. Human splicing diversity across the Sequence Read Archive. BioRxiv doi: 10.1101/038224. Nellore A, Wilks C, Hansen KD, Leek JT, Langmead B. Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce. 2016 Apr 21. pii: btw177. Describes the Rail-dbGaP software. BioRxiv doi: 10.1101/019067. Frazee AC, Col...