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hivdb.stanford.edu

HIV Drug Resistance Database

HIV Drug Resistance Database. A curated public database to represent, store and analyze HIV drug resistance data. Analyze sequence sets for proportions with Surveillance Drug Resistance Mutations (SDRMs). Interactive map displaying HIV-1 drug resistance in ARV-naive populations. Retrieve sequences (and/or mutations) from persons receiving selected HIV drugs. Retrieve sequences and treatments from viruses with specific mutations. Retrieve drug susceptibility data for isolates with selected mutations.

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HIV Drug Resistance Database | hivdb.stanford.edu Reviews
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HIV Drug Resistance Database. A curated public database to represent, store and analyze HIV drug resistance data. Analyze sequence sets for proportions with Surveillance Drug Resistance Mutations (SDRMs). Interactive map displaying HIV-1 drug resistance in ARV-naive populations. Retrieve sequences (and/or mutations) from persons receiving selected HIV drugs. Retrieve sequences and treatments from viruses with specific mutations. Retrieve drug susceptibility data for isolates with selected mutations.
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1 stanford university
2 genotype rx
3 genotype pheno
4 genotype clinical
5 hiv db
6 program
7 about hiv db
8 surveillance mutations
9 point of care /
10 essential mutations
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HIV Drug Resistance Database | hivdb.stanford.edu Reviews

https://hivdb.stanford.edu

HIV Drug Resistance Database. A curated public database to represent, store and analyze HIV drug resistance data. Analyze sequence sets for proportions with Surveillance Drug Resistance Mutations (SDRMs). Interactive map displaying HIV-1 drug resistance in ARV-naive populations. Retrieve sequences (and/or mutations) from persons receiving selected HIV drugs. Retrieve sequences and treatments from viruses with specific mutations. Retrieve drug susceptibility data for isolates with selected mutations.

INTERNAL PAGES

hivdb.stanford.edu hivdb.stanford.edu
1

HIV Drug Resistance Database

https://hivdb.stanford.edu/pages/genotype-phenotype.html

PI, NRTI, NNRTI, INI. Patterns of Drug-Resistance Mutations. Download protease and RT phenotype dataset. Drug susceptibility results (PhenoSense assay) defined as fold-decreased susceptibility compared to wildtype of viruses containing a mutation at the user-selected position. Results are aggregated by the pattern of accompanying nonpolymorphic established drug-resistance mutations. Sequences containing electrophoretic mixtures at a drug-resistance position are excluded from the results. Medi...

2

HBVseq

https://hivdb.stanford.edu/HBV/releaseNotes

A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance. HBV Site Release Notes. HBVrt DB was constructed by annotating the body of publicly available HBV RT sequences which were obtained from a BLAST search using a HBV RT consensus amino acid sequence against GenBank viral sequence files. To browse the prevalence of mutations at all 344 HBV RT positions in HBVrt DB, use 'HBV RT Mutations According to Genotype and Treatment'. A sequen...

3

HIV Drug Resistance Database

https://hivdb.stanford.edu/pages/publications.html

American Society for Microbiology. Rhee SY, Sankaran K, Varghese V, Winters M, Hurt CB, Eron JJ, Parkin N, Holmes SP, Holodniy M, Shafer RW (2016). HIV-1 Protease, Reverse Transcriptase, and Integrase Variation. J Virol.,. Mary Ann Libert, Inc. Varghese V, Pinsky BA, Smith DS, Klein D, Shafer RW (2016). Q148N, a Novel Integrase Inhibitor Resistance Mutation Associated with Low-Level Reduction in Elvitegravir Susceptibility. AIDS Res Hum Retroviruses,. ELife Sciences Publications Ltd. Melikian GL, Rhee SY...

4

HIV Drug Resistance Database

https://hivdb.stanford.edu/pages/FAQ/FAQ.html

Terms of Use and FAQs. Last updated on June 28, 2016. Comments and suggestions to HIVDB. I Terms of Use. What is the purpose of the HIV Drug Resistance Database (HIVDB)? HIV drug resistance data are critical for HIV drug resistance surveillance, ARV drug design, and the management of persons infected with drug-resistant HIV. These data are best represented in a database that not only catalogs mutations associated with drug resistance but also links complete genetic sequences to other forms of data. In ot...

5

HIV Drug Resistance Database

https://hivdb.stanford.edu/pages/citation.html

How to Cite the HIV Drug Resistance Database. Reproduced with Permission from NAR Online. Soo-Yon Rhee, Matthew J. Gonzales, Rami Kantor, Bradley J. Betts, Jaideep Ravela, and Robert W. Shafer (2003) Human immunodeficiency virus reverse transcriptase and protease sequence database. Nucleic Acids Research,. Shafer RW(2006). Rationale and Uses of a Public HIV Drug-Resistance Database. Journal of Infectious Diseases. 42(11):1608-18. Epub 2006 Apr 28. 20(5):643-651, March 21, 2006. Terms of Use / FAQs.

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bmi_205_spring_2009 [BMI 205]

http://bmi205.stanford.edu/bmi_205_spring_2009

Bmi 205 spring 2009. Bmi 205 spring 2009. BMI 205: Biomedical Informatics for Medicine. Schedule, Spring 2009. BMI 205: Biomedical Informatics for Medicine. Time: Wednesdays 12:00-1:00, lunch will be provided. Schedule, Spring 2009. Michael G. Walker. Development of A Multigene Assay to Predict Recurrence of Breast Cancer. Developmental Biology and Computer Science. Ultraconservation and the Human Genome regulatory landscape. Biomarker Discovery from Public Gene Expression Data. Medicine, HRP, Economics.

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HIV Genotyping / Sequencing - Clinical Virology - Stanford University School of Medicine

http://clinicalvirology.stanford.edu/hiv.html

Clinical Virology –. In the Department of Pathology. Viral Genotyping and Antiviral Resistance Testing. HIV-1 genotyping and antiretroviral resistance testing by sequence analysis. Our HIV genotyping and drug resistance testing results are reviewed by Dr. Robert Shafer, an expert in the mechanisms and consequences of HIV evolution and the architect of the world-renown HIV Drug Resistance Database (see next section). Dr. Shafer has over 25 years of experience in the area of HIV/AIDS and is ava...The Stanf...

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Work Packages - dynanets.org

http://dynanets.org/work-packages;jsessionid=8F50EA7C23970F039616620FD48C162C

This article is ' Highly accessed. Total accesses to this article since publication: 1197) relative to age in BioMed Central. Increasing risk behaviour can outweigh the benefits of antiretroviral drug treatment on the HIV incidence among men-having-sex-with-men in Amsterdam. Shan Mei, Rick Quax, David VAN de Vijver, Yifan Zhu and pma. Sloot BMC Infectious Diseases, 11:118 (11 May 2011). BMC Systems Biology, vol. 4, nr 1 pp. 96 17. 2010. This paper received the ICCS best paper award 2010:. Leaders in pare...

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Resistentie bepaling (genotypering) | ARL Gent

http://www.arl.ugent.be/laboratoriumtesten/resistentie-bepaling-genotypering

Als er tegen bepaalde HIV-remmers resistentie is ontstaan, kan dit met behulp van resistentiebepaling worden opgespoord. De resultaten van de resistentiebepaling laten de arts toe een nieuwe werkzame drug-combinatie samen te stellen. Specificaties van de test. OPSPOREN VAN HIV DRUG RESISTENTIE. In het ARL UGent wordt een in-house methode gebruikt voor de amplificatie en de daaropvolgende sequentieanalyse van het volgende HIV-1 targets:. Het reverse transcriptase (aminozuur 1 tot 300). De methode voor seq...

sigallab.net sigallab.net

Links

http://www.sigallab.net/links.html

Max Planck Institute for Infection Biology. The Ragon Institute of MGH, MIT and Harvard. Reference Portal on HIV Reservoirs and Eradication Strategies. HIV InSite (UCSF School of Medicine). Stanford HIV RT and Protease Database. TB Drug Resistance Mutation Database. Library of Annotated Reporter Cell Clones (LARC). Ron Milo lab at Weizmann. Template by OS Templates.

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Educational Resources – Garden State Infectious Diseases Associates, P.A.

http://www.gsida.org/educational-resources

Phone (856) 566-3190 * Toll Free (800) 822-9332 * Fax (856) 566-1904. HIV Early Intervention Program (EIP). Free Rapid HIV Testing. This section of our website is dedicated to providing HIV, palliative care, and infectious-disease related education in our global outreach efforts — straight from Voorhees, New Jersey, to Uganda for Kawempe Home Care. Also located in NJ, Samaritan Hospice. Check out our very first educational video — HIV and Cancer. HIV and Palliative Care: UNAIDS Technical Update. Center f...

genomica.uaslp.mx genomica.uaslp.mx

LGVH - Pre-Graduate Molecular Biology Course

http://www.genomica.uaslp.mx/Academia/MedSchool/MolBio.html

Pre-grad molecular biology course. Post-grad molecular biology course. KIR Haplotype Tool (KIRHAT). Oligo design by IDT. LANL HIV Seq QC. Stanford HIV Drug DB. Lab Tools and Forms. Pre-Graduate (Medical School) Molecular Biology Course 2016. Facultad de Medicina, Universidad Autónoma de San Luis Potosí. Unit 1. From Tuesday January 19, 2016 to Monday February 8, 2016. Total allocated time: 14 hours. Schedule: monday through friday from 10:00 to 11:00 hrs plus extra sessions upon request. Replication in e...

genomica.uaslp.mx genomica.uaslp.mx

LGVH - Equipment Manuals Database

http://www.genomica.uaslp.mx/Databases/Manuals.html

Pre-grad molecular biology course. Post-grad molecular biology course. KIR Haplotype Tool (KIRHAT). Oligo design by IDT. LANL HIV Seq QC. Stanford HIV Drug DB. Lab Tools and Forms. Lab Tools and Forms. Reagent and Equipment Manuals. This section includes reference texts, guidelines and manuals which we have found interesting, particularly useful or essential. They are provided in this website for ease of use as they are publicly available elsewhere on the web. Quantitative and Real Time PCR and RT-PCR.

genomica.uaslp.mx genomica.uaslp.mx

LGVH - Administrative personnel

http://www.genomica.uaslp.mx/Acerca/pea.html

Pre-grad molecular biology course. Post-grad molecular biology course. KIR Haplotype Tool (KIRHAT). Oligo design by IDT. LANL HIV Seq QC. Stanford HIV Drug DB. Lab Tools and Forms. Dulce María Hernández Piña. Dulce holds a bachelor's degree in social work from Universidad Potosina and is responsible for managing the laboratory as well as research project finances. She is the laboratory's liaison agent for suppliers and general public.

genomica.uaslp.mx genomica.uaslp.mx

LGVH - Reference Texts Database

http://www.genomica.uaslp.mx/Databases/Reference.html

Pre-grad molecular biology course. Post-grad molecular biology course. KIR Haplotype Tool (KIRHAT). Oligo design by IDT. LANL HIV Seq QC. Stanford HIV Drug DB. Lab Tools and Forms. Lab Tools and Forms. Guidelines and Reference Document Database. This section includes reference texts, guidelines and manuals which we have found interesting, particularly useful or essential. They are provided in this website for ease of use as they are publicly available elsewhere on the web. NIH Guidelines for Research Inv...

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HIV Drug Resistance Database

HIV Drug Resistance Database. A curated public database to represent, store and analyze HIV drug resistance data. Analyze sequence sets for proportions with Surveillance Drug Resistance Mutations (SDRMs). Interactive map displaying HIV-1 drug resistance in ARV-naive populations. Retrieve sequences (and/or mutations) from persons receiving selected HIV drugs. Retrieve sequences and treatments from viruses with specific mutations. Retrieve drug susceptibility data for isolates with selected mutations.

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HIV/AIDS, Deafness & Disabilities

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