hordeumtoolbox.org

The Hordeum Toolbox

Select Lines by Properties. Select Lines by Phenotype. Cluster Lines by Genotype. Download Genotype/Phenotype Data (Tassel format). Download Genotype Data (Flapjack format). Welcome to The Hordeum Toolbox (THT)! THT is the webportal for the data generated by the Barley Coordinated Agricultural Project. Search by Breeding Program. Busch Agricultural Resources Inc - BA. Montana State University - MT. North Dakota State (NDSU 2-Row) - N2. North Dakota State (NDSU 6-Row) - N6. Oregon State University - OR.

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The Hordeum Toolbox | hordeumtoolbox.org Reviews

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Select Lines by Properties. Select Lines by Phenotype. Cluster Lines by Genotype. Download Genotype/Phenotype Data (Tassel format). Download Genotype Data (Flapjack format). Welcome to The Hordeum Toolbox (THT)! THT is the webportal for the data generated by the Barley Coordinated Agricultural Project. Search by Breeding Program. Busch Agricultural Resources Inc - BA. Montana State University - MT. North Dakota State (NDSU 2-Row) - N2. North Dakota State (NDSU 6-Row) - N6. Oregon State University - OR.

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The Hordeum Toolbox | hordeumtoolbox.org Reviews

https://hordeumtoolbox.org

Select Lines by Properties. Select Lines by Phenotype. Cluster Lines by Genotype. Download Genotype/Phenotype Data (Tassel format). Download Genotype Data (Flapjack format). Welcome to The Hordeum Toolbox (THT)! THT is the webportal for the data generated by the Barley Coordinated Agricultural Project. Search by Breeding Program. Busch Agricultural Resources Inc - BA. Montana State University - MT. North Dakota State (NDSU 2-Row) - N2. North Dakota State (NDSU 6-Row) - N6. Oregon State University - OR.

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hordeumtoolbox.org

1

The Hordeum Toolbox

http://www.hordeumtoolbox.org/genotyping/marker_selection.php

Select Lines by Properties. Select Lines by Phenotype. Cluster Lines by Genotype. Download Genotype/Phenotype Data (Tassel format). Download Genotype Data (Flapjack format). Select markers by name. Synonyms will be translated. Select markers in a range of map positions. Hover over a marker and click "Select in THT" in the popup balloon. To send questions or suggestions to the THT curators, please click here. Is part of the Barley CAP.

2

The Hordeum Toolbox

http://www.hordeumtoolbox.org/downloads/downloads.php

Select Lines by Properties. Select Lines by Phenotype. Cluster Lines by Genotype. Download Genotype/Phenotype Data (Tassel format). Download Genotype Data (Flapjack format). Select multiple options by holding down the Ctrl key while clicking. 1 Breeding Program and Year. Busch Agricultural Resources Inc(BA). North Dakota State (NDSU 2-Row)(N2). North Dakota State (NDSU 6-Row)(N6). To send questions or suggestions to the THT curators, please click here. Is part of the Barley CAP.

3

The Hordeum Toolbox

http://www.hordeumtoolbox.org//flapjack_download.php

Select Lines by Properties. Select Lines by Phenotype. Cluster Lines by Genotype. Download Genotype/Phenotype Data (Tassel format). Download Genotype Data (Flapjack format). Is a standalone Java tool for graphical genotyping developed by the Scottish Crop Research Institute (SCRI) Bioinformatics Group. You will need to download the code from SCRI. Please select Genotype or Map below to generate Flapjack files. To send questions or suggestions to the THT curators, please click here.

4

The Hordeum Toolbox

http://www.hordeumtoolbox.org/about.php

Select Lines by Properties. Select Lines by Phenotype. Cluster Lines by Genotype. Download Genotype/Phenotype Data (Tassel format). Download Genotype Data (Flapjack format). Will be made public within six months of release by the. Curators. During the six month period, the data will only be available to members of the Barley. Team unless explicitly released by the data creators. The THT software is available under the GNU General Public License ( LICENSE. And may be downloaded from github. To send questi...

5

The Hordeum Toolbox

http://www.hordeumtoolbox.org/cluster_lines.php

Select Lines by Properties. Select Lines by Phenotype. Cluster Lines by Genotype. Download Genotype/Phenotype Data (Tassel format). Download Genotype Data (Flapjack format). Cluster Lines by Genotype. This R program will cluster the currently selected lines. According to their alleles for all markers, using "pam" (Partitioning Around Medoids). When you have examined the results you can select the clusters you want to work with. How many clusters should pam divide the lines into? Is part of the Barley CAP.

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The Triticeae Toolbox

https://t3sandbox.org/t3

T3 Wheat for curation. T3 Wheat, development. T3 Barley for curation. T3 Oat for curation. Receives curated, stable data from the Curator. Wheat color scheme. Wheat line submission script and property tables. Different color scheme, line submission script and property tables relative to wheat. Same data management. Wheat colors, line submission script and property tables. For the Oat Global. Wheat colors, line submission script and property tables. For the US Wheat and Barley Scab Initiative. Project, su...

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The Hordeum Toolbox

Select Lines by Properties. Select Lines by Phenotype. Cluster Lines by Genotype. Download Genotype/Phenotype Data (Tassel format). Download Genotype Data (Flapjack format). Welcome to The Hordeum Toolbox (THT)! THT is the webportal for the data generated by the Barley Coordinated Agricultural Project. Search by Breeding Program. Busch Agricultural Resources Inc - BA. Montana State University - MT. North Dakota State (NDSU 2-Row) - N2. North Dakota State (NDSU 6-Row) - N6. Oregon State University - OR.

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