hpmv.bii.a-star.edu.sg

HPMV: Human Protein Mutation Viewer

HPMV: Human Protein Mutation Viewer. Calculate fresh cartoon from any FASTA sequence ( cut&paste. Map genome coordinates to protein mutations for cartoons. Or as raw output. Get cartoons for all proteins within a specified chromosome region. Linking: http:/ hpmv.bii.a-star.edu.sg/SeqLink? Upload input files of protein mutations. Or genome coordinates ( for cartoons. Or as raw output. View cartoons in standalone Java client. Tutorial for web site. Or for standalone Java client. Contact the author: wes .

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HPMV: Human Protein Mutation Viewer | hpmv.bii.a-star.edu.sg Reviews

<META> DESCRIPTION

HPMV: Human Protein Mutation Viewer. Calculate fresh cartoon from any FASTA sequence ( cut&paste. Map genome coordinates to protein mutations for cartoons. Or as raw output. Get cartoons for all proteins within a specified chromosome region. Linking: http:/ hpmv.bii.a-star.edu.sg/SeqLink? Upload input files of protein mutations. Or genome coordinates ( for cartoons. Or as raw output. View cartoons in standalone Java client. Tutorial for web site. Or for standalone Java client. Contact the author: wes .

<META> KEYWORDS

1 enter protein

2 mutations

3 clear

4 example

5 interpret mutations

6 uniprot mapping service

7 additional functionality

8 or file upload

9 supplementary information

10 original hmv website

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HPMV: Human Protein Mutation Viewer | hpmv.bii.a-star.edu.sg Reviews

https://hpmv.bii.a-star.edu.sg

HPMV: Human Protein Mutation Viewer. Calculate fresh cartoon from any FASTA sequence ( cut&paste. Map genome coordinates to protein mutations for cartoons. Or as raw output. Get cartoons for all proteins within a specified chromosome region. Linking: http:/ hpmv.bii.a-star.edu.sg/SeqLink? Upload input files of protein mutations. Or genome coordinates ( for cartoons. Or as raw output. View cartoons in standalone Java client. Tutorial for web site. Or for standalone Java client. Contact the author: wes .

INTERNAL PAGES

hpmv.bii.a-star.edu.sg

1

Calculate FASTA Cartoon

http://hpmv.bii.a-star.edu.sg/FreshForm

Calculate Fresh Cartoon from FASTA Sequences. For feature prediction the taxonomy of the input sequences is. Space-separated words in the description line are mutations:. Perform additional mutant feature predictions to interpret mutations:.

2

HPMV: Mutation Format

http://hpmv.bii.a-star.edu.sg/MutationFormat

HPMV accepts the following mutation specifiers:. A123L p.A123L p.Ala123Leu. PA123 C124del p.Ala123 Cys124del. Point deletions with insertion. Range deletions with insertion. PA123 C124delinsW p.Ala123 Cys124delinsTrp. A123* p.A123* p.Ala123Ter. PA123fs p.Ala123fs p.A123Gfs p.Ala123Glyfs p.A123Gfs*26 p.Ala123GlyfsTer23. PA123 C124insQSK p.Ala123 Cys124insGlnSerLys. PA123 C124ins3 p.Ala123 Cys124ins3. PA123 C124dup p.Ala123 Cys124dup. HPMV uses the first number in the label as the position.

3

HPMV: Map Genome Coordinates

http://hpmv.bii.a-star.edu.sg/GenCoordForm

Map Genome Coordinates to Protein Mutations (for Cartoons). 1 222903377 A G 1 222906043 G A 17 5487048 A G 17 7573001 T G 20 4679892 T G 20 4680216 C A 20 4680555 C T 20 36012560 G C 20 36031760 A T 21 27423407 C T. The coordinates are relative to. The input values/columns are separated by. Of the input is the chromosome/contig (CHROM). Of the input is the position (POS) along the chromosome/contig. Of the input is the reference (REF) nucleotide/sequence.

4

HPMV: Protein Accession Format

http://hpmv.bii.a-star.edu.sg/UniProtFormat

Numbers to refer to sequences. For example, in. Sp P04156 PRIO HUMAN. HPMV will try to find the UniProt accession number in the first value that is provided. Recognized formats include:. Sp P04156 PRIO HUMAN.

5

HPMV: Map Genome Coordinates

http://hpmv.bii.a-star.edu.sg/MappingForm

Map Genome Coordinates to Protein Mutations (Raw Output). 21 27425653 C G 17 7579320 T AA 20 4680234 GG G 20 36022314 . G 1 222895822 A . 17 5486069 . . The coordinates are relative to. The input values/columns are separated by. Of the input is the chromosome/contig (CHROM). Of the input is the position (POS) along the chromosome/contig. Of the input is the reference (REF) nucleotide/sequence. Of the input is the alternate (ALT) nucleotide/sequence. Return the mapping output in.

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APD Colony Counter App: Using Watershed Algorithm for improved colony counting. Reactivation of mutant p53: Constraints on mechanism highlighted by principal component analysis of the DNA binding domain. PP2ACdc55's role in reductional chromosome segregation during achiasmate meiosis in budding yeast is independent of its FEAR function. PDK1-SGK1 signaling sustains AKT-independent mTORC1 activation and confers resistance to PI3Kα inhibition. Tue, 23 Aug 2016. 10-12 October, 2016.

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HPMV: Human Protein Mutation Viewer. Calculate fresh cartoon from any FASTA sequence ( cut&paste. Map genome coordinates to protein mutations for cartoons. Or as raw output. Get cartoons for all proteins within a specified chromosome region. Linking: http:/ hpmv.bii.a-star.edu.sg/SeqLink? Upload input files of protein mutations. Or genome coordinates ( for cartoons. Or as raw output. View cartoons in standalone Java client. Tutorial for web site. Or for standalone Java client. Contact the author: wes .

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