idotamir.blogspot.com

vademecum

Sonntag, 6. September 2009. Adventures in the galaxy Pt.2. The project on github had to be updated, because the user-group association was not created. This is part two of the series for creating an importer for galaxy. Shows the basic setup for checkout and development and bootstrapping the galaxy system. This part will intoduce an implementation of an importer. Checkout a branch of galaxy with the importer included and take it for a test drive. The scripts for the importer are in the importer subfolder.

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vademecum | idotamir.blogspot.com Reviews

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Sonntag, 6. September 2009. Adventures in the galaxy Pt.2. The project on github had to be updated, because the user-group association was not created. This is part two of the series for creating an importer for galaxy. Shows the basic setup for checkout and development and bootstrapping the galaxy system. This part will intoduce an implementation of an importer. Checkout a branch of galaxy with the importer included and take it for a test drive. The scripts for the importer are in the importer subfolder.

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1 vademecum

2 introduction

3 part one

4 importer test drive

5 building blocks

6 file

7 purpose

8 importercommon py

9 utility functions

10 importermodel py

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vademecum,introduction,part one,importer test drive,building blocks,file,purpose,importercommon py,utility functions,importermodel py,importer py,real worker,sampleio py,sampleiotest py,users lib py,import lib py,init py,standard python,samples xml,rbac

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vademecum | idotamir.blogspot.com Reviews

https://idotamir.blogspot.com

Sonntag, 6. September 2009. Adventures in the galaxy Pt.2. The project on github had to be updated, because the user-group association was not created. This is part two of the series for creating an importer for galaxy. Shows the basic setup for checkout and development and bootstrapping the galaxy system. This part will intoduce an implementation of an importer. Checkout a branch of galaxy with the importer included and take it for a test drive. The scripts for the importer are in the importer subfolder.

INTERNAL PAGES

idotamir.blogspot.com

1

vademecum: Mappable Map

http://idotamir.blogspot.com/2009/08/back-from-vacation.html

Montag, 31. August 2009. Back from vacation. This three liner creates a mappable map of the genome. It takes about a day on our new 16 core machine that I wanted to stress a little bit. splitter is of course from emboss. Is used for quick exact matching. Abonnieren Kommentare zum Post (Atom). Adventures in the galaxy Pt.1. Mein Profil vollständig anzeigen.

2

vademecum: Adventures in the galaxy Pt.1

http://idotamir.blogspot.com/2009/08/adventures-in-galaxy-pt1.html

Sonntag, 16. August 2009. Adventures in the galaxy Pt.1. Over a series of blogs called "adventures in the galaxy", I will show how to create a customized importer of data into galaxy. In case you don't know what galaxy is: its a web frontend for bioinformatic programs. The nice thing about galaxy is that it remembers the complete history of a data-set. This includes all the transformations together with the parameters and all the data-sets it has been combined with. Hg clone http:/ bitbucket.org/gala...

3

vademecum: August 2009

http://idotamir.blogspot.com/2009_08_01_archive.html

Montag, 31. August 2009. Back from vacation. This three liner creates a mappable map of the genome. It takes about a day on our new 16 core machine that I wanted to stress a little bit. splitter is of course from emboss. Is used for quick exact matching. Links zu diesem Post. Sonntag, 16. August 2009. Adventures in the galaxy Pt.1. Over a series of blogs called "adventures in the galaxy", I will show how to create a customized importer of data into galaxy. In order to develop clone the repository, create...

4

vademecum: Adventures in the galaxy Pt.2

http://idotamir.blogspot.com/2009/09/adventures-in-galaxy-pt2.html

Sonntag, 6. September 2009. Adventures in the galaxy Pt.2. The project on github had to be updated, because the user-group association was not created. This is part two of the series for creating an importer for galaxy. Shows the basic setup for checkout and development and bootstrapping the galaxy system. This part will intoduce an implementation of an importer. Checkout a branch of galaxy with the importer included and take it for a test drive. The scripts for the importer are in the importer subfolder.

5

vademecum: September 2009

http://idotamir.blogspot.com/2009_09_01_archive.html

Sonntag, 6. September 2009. Adventures in the galaxy Pt.2. The project on github had to be updated, because the user-group association was not created. This is part two of the series for creating an importer for galaxy. Shows the basic setup for checkout and development and bootstrapping the galaxy system. This part will intoduce an implementation of an importer. Checkout a branch of galaxy with the importer included and take it for a test drive. The scripts for the importer are in the importer subfolder.

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Sonntag, 6. September 2009. Adventures in the galaxy Pt.2. The project on github had to be updated, because the user-group association was not created. This is part two of the series for creating an importer for galaxy. Shows the basic setup for checkout and development and bootstrapping the galaxy system. This part will intoduce an implementation of an importer. Checkout a branch of galaxy with the importer included and take it for a test drive. The scripts for the importer are in the importer subfolder.

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