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iGPS - Prediction of site-specific kinase-substrate relations from phosphoproteomic data

Last update: Feb. 10th, 2014. Catalyzed by protein kinases. PKs) is one of the most important and ubiquitous post-translational modifications. PTMs) of proteins. It temporally and spatially modifies approximately 30% of all cellular proteins, and plays a crucial role in regulating a variety of biological processes, such as signal transduction and the cell cycle ( Kobe,. Ptacek and Snyder, 2006. Ubersax and Ferrell, 2007. The human genome encodes 518 PK genes. Ptacek and Snyder, 2006. Tan and Linding, 2009.

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iGPS - Prediction of site-specific kinase-substrate relations from phosphoproteomic data | igps.biocuckoo.org Reviews
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Last update: Feb. 10th, 2014. Catalyzed by protein kinases. PKs) is one of the most important and ubiquitous post-translational modifications. PTMs) of proteins. It temporally and spatially modifies approximately 30% of all cellular proteins, and plays a crucial role in regulating a variety of biological processes, such as signal transduction and the cell cycle ( Kobe,. Ptacek and Snyder, 2006. Ubersax and Ferrell, 2007. The human genome encodes 518 PK genes. Ptacek and Snyder, 2006. Tan and Linding, 2009.
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iGPS - Prediction of site-specific kinase-substrate relations from phosphoproteomic data | igps.biocuckoo.org Reviews

https://igps.biocuckoo.org

Last update: Feb. 10th, 2014. Catalyzed by protein kinases. PKs) is one of the most important and ubiquitous post-translational modifications. PTMs) of proteins. It temporally and spatially modifies approximately 30% of all cellular proteins, and plays a crucial role in regulating a variety of biological processes, such as signal transduction and the cell cycle ( Kobe,. Ptacek and Snyder, 2006. Ubersax and Ferrell, 2007. The human genome encodes 518 PK genes. Ptacek and Snyder, 2006. Tan and Linding, 2009.

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iGPS - Prediction of site-specific kinase-substrate relations from phosphoproteomic data

http://igps.biocuckoo.org/links.php

Last update: Feb. 10th, 2014. Computational resources of protein phosphorylation :. Last updated: May 12, 2010. 60 is available at: Comparison data. We apologized that the computational studies without any web links of databases or tools will not be included in this compendium, since it's not easy for experimentalists to use studies directly. We are grateful for users feedback. Please inform Prof. Yu Xue. Or Prof. Jian Ren. To add, remove or update one or multiple web links below. PhosphoNET presently ho...

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iGPS - Prediction of site-specific kinase-substrate relations from phosphoproteomic data

http://igps.biocuckoo.org/faq.php

Last update: Feb. 10th, 2014. From your example sequence P53667. The iGPS predicts severl results below:. 1) S179 AGC/AKT SHGKRGLSVSIDPPH 2.011 1.21 String. 2) S298 AGC/AKT KPVLRSCSIDRSPGA 1.64 1.21 String. 3) S323 AGC/PKC KDLGRSESLRVVCRP 3.588 1.98 String. How to interpret the results? For example, since the scores of (3) (1) (2), whether the predictions mean that the correct probability is (3) (1) (2)? This is the mostly asked questions from users. How to use the iGPS software? Kinase recognition. ...

3

iGPS - Prediction of site-specific kinase-substrate relations from phosphoproteomic data

http://igps.biocuckoo.org/index.php

Last update: Feb. 10th, 2014. Catalyzed by protein kinases. PKs) is one of the most important and ubiquitous post-translational modifications. PTMs) of proteins. It temporally and spatially modifies approximately 30% of all cellular proteins, and plays a crucial role in regulating a variety of biological processes, such as signal transduction and the cell cycle ( Kobe,. Ptacek and Snyder, 2006. Ubersax and Ferrell, 2007. The human genome encodes 518 PK genes. Ptacek and Snyder, 2006. Tan and Linding, 2009.

4

iGPS - Prediction of site-specific kinase-substrate relations from phosphoproteomic data

http://igps.biocuckoo.org/down.php

Last update: Feb. 10th, 2014. IGPS Software Packages Download. 1 The iGPS does not provide online service, because loading online JAVA applet in a web browser is too time-consuming. 2 The iGPS is ONLY freely available for academic research. And for commercial usage, please contact us. Please download iGPS installation package by clicking the link below:. Current Release: iGPS 1.0.1. IGPS 1.0.1 windows 20120913.exe. Mac OS X Platform. IGPS 1.0.1 macos 20120913.dmg. IGPS 1.0.1 unix 20120913.sh.

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GPS-TSP 1.0 - Prediction of Tyrosine of Sulfation Sites

http://tsp.biocuckoo.org/userguide.php

Last update: Oct. 20th, 2014. In DOSS 1.0 database, we tried to make it more powerful and convenient to be used. The online service and local packages were provided. This USAGE is prepared for the online service of the database. The DOSS 1.0 provide the search option and advance options. ( DOSS ID. Please click on the Example button to search C3AR1 in Gene Name field. By clicking on the Submit button, the related doss proteins will be shown. Will be shown by clicking on the Submit button. You can browse ...

tsp.biocuckoo.org tsp.biocuckoo.org

GPS-TSP 1.0 - Prediction of Tyrosine of Sulfation Sites

http://tsp.biocuckoo.org/index.php

Last update: Oct. 20th, 2014. 8251; GPS-TSP INTRODUCTION:. Tyrosine sulfation is a ubiquitous PTM that predominantly modifies proteins in the secretory pathway ( Bundgaard. Walsh and Jefferis, 2006. And plays an important role in regulating chemotaxis ( Monigatti. Walsh and Jefferis, 2006. Inflammatory response ( Gao. And cell adhesion ( Stone. In animals, the sulfation is catalyzed by two closely related tyrosylprotein sulfotransferases (TPST-1 and TPST-2) ( Monigatti. Walsh and Jefferis, 2006. Experime...

tsp.biocuckoo.org tsp.biocuckoo.org

GPS-TSP 1.0 - Prediction of Tyrosine of Sulfation Sites

http://tsp.biocuckoo.org/download.php

Last update: Oct. 20th, 2014. GPS-TSP 1.0 Software Download. GPS-TSP 1.0 is ONLY freely available for academic research. And for commercial usage, please contact us. Please download GPS-TSP 1.0 installation package by clicking the link below:. Current Release: GPS-TSP 1.0.0. GPS-TSP 1 0 windows 20141127.exe. Mac OS X Platform. GPS-TSP 1 0 macos 20141127.dmg. GPS-TSP 1 0 unix 20141127.sh. Please read the Manual. 8251; Dataset Download:. British Indian Ocean Territory. Congo, the Democratic Republic of the.

csspalm.biocuckoo.org csspalm.biocuckoo.org

CSS-Palm - Palmitoylation Site Prediction

http://csspalm.biocuckoo.org/down.php

Last update: Feb. 27th, 2014. The CSS-Palm is ONLY freely available for academic research. And for commercial usage, please contact us. Please download CSS-Palm installation package by clicking the link below:. For the prediction of N-Myristoylation, S-Farnesylation and S-Geranylgeranylation sites, please use GPS-Lipid. Current Release: CSS-Palm 4.0. CSS-Palm 4.0 windows 20131223.exe. Mac OS X Platform. CSS-Palm 4.0 macos 20131223.dmg. CSS-Palm 4.0 unix 20131223.sh. Archive: CSS-Palm 3.0.

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CSS-Palm - Palmitoylation Site Prediction

http://csspalm.biocuckoo.org/database.php

Last update: Feb. 27th, 2014. PALM Database Online Service. Please input one or multiple keywords to search the Palmitoylation find the related information you need:. Palmitoylation database provides three online advance options, including advance search,browse, BLAST search. Please input a PROTEIN.

polo.biocuckoo.org polo.biocuckoo.org

GPS-Polo 1.0 - Prediction for Polo-like kinases

http://polo.biocuckoo.org/faq.php

Last update: Feb. 28th, 2014. How to use GPS-Polo 1.0 web service? Please visit the latest version of GPS-Polo 1.0 at http:/ polo.biocuckoo.org/down.php. I can't view the program properly, what should I do? Page or our website. However, for Mac OS, the GPS-Polo 1.0 could be used directly without any additional packages. Finally, if you can still not view the program properly, please send us an email and tell me the OS information on your computer. We will resolve the problem ASAP. And Dr. Jian Ren. By de...

polo.biocuckoo.org polo.biocuckoo.org

GPS-Polo 1.0 - Prediction for Polo-like kinases

http://polo.biocuckoo.org/down.php

Last update: Feb. 28th, 2014. GPS-Polo 1.0 is ONLY freely available for academic research. And for commercial usage, please contact us. Please download GPS-Polo 1.0 installation package by clicking the link below:. Current Release: GPS-Polo 1.0. GPS-Polo 1 0 windows 20110330.exe. Mac OS X Platform. GPS-Polo 1 0 macos 20110330.dmg. GPS-Polo 1 0 unix 20110330.sh. After download just double-click on the software package to begin installation. Then follow the user prompts through the installation.

gps.biocuckoo.org gps.biocuckoo.org

GPS 3.0 - Kinase-specific Phosphorylation Site Prediction

http://gps.biocuckoo.org/userguide.php

Last update: Sep. 10th, 2014. 8251; User Guide:. How to use GPS 3.0 software? You can find the latest version of GPS 3.0 at http:/ gps.biocuckoo.org/download.php. Then download and install the GPS 3.0 software to your computer.Currently, GPS 3.0 is implemented in JAVA and could be installed on a computer with Windows/Linux/Unix/Mac OS . And we also wrote a manual for users which included in the installation package. What's the difference between simple prediction and comprehensive prediction? The value c...

tsp.biocuckoo.org tsp.biocuckoo.org

GPS-TSP 1.0 - Prediction of Tyrosine of Sulfation Sites

http://tsp.biocuckoo.org/online.php

Last update: Oct. 20th, 2014. To use GPS-TSP 1.0 in your web browser, you should install Sun Microsystems Java Runtime Environment (JRE). To get the latest version of the JRE, please visit the http:/ java.com. Page, and choose the proper JRE package based on your operating system and browser. For convenience, you can also download the JRE packages from our website. If your sequences 1000. Please download the local version. The local version is more powerful and has more functions.

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iGPS - Prediction of site-specific kinase-substrate relations from phosphoproteomic data

Last update: Feb. 10th, 2014. Catalyzed by protein kinases. PKs) is one of the most important and ubiquitous post-translational modifications. PTMs) of proteins. It temporally and spatially modifies approximately 30% of all cellular proteins, and plays a crucial role in regulating a variety of biological processes, such as signal transduction and the cell cycle ( Kobe,. Ptacek and Snyder, 2006. Ubersax and Ferrell, 2007. The human genome encodes 518 PK genes. Ptacek and Snyder, 2006. Tan and Linding, 2009.

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