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IMMUNOBASE.ORG

ImmunoBase - Home Page

Is a web based resource focused on the genetics and genomics of immunologically related human diseases. Our mission is to provide a curated and integrated set of datasets and tools, across multiple diseases, to support and promote research in this area. ( More. ImmunoBase is a collaboration:. Comment on this Page. Printed on Mon August 10, 2015.

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ImmunoBase - Home Page | immunobase.org Reviews
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Is a web based resource focused on the genetics and genomics of immunologically related human diseases. Our mission is to provide a curated and integrated set of datasets and tools, across multiple diseases, to support and promote research in this area. ( More. ImmunoBase is a collaboration:. Comment on this Page. Printed on Mon August 10, 2015.
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ImmunoBase - Home Page | immunobase.org Reviews

https://immunobase.org

Is a web based resource focused on the genetics and genomics of immunologically related human diseases. Our mission is to provide a curated and integrated set of datasets and tools, across multiple diseases, to support and promote research in this area. ( More. ImmunoBase is a collaboration:. Comment on this Page. Printed on Mon August 10, 2015.

INTERNAL PAGES

immunobase.org immunobase.org
1

Human (GRCh38): 57.95 kbp from chr1:113,813,811..113,871,759

http://www.immunobase.org/fgb2/gbrowse/Hs_GRCh38

Help with this browser. Show my user ID. Human (GRCh38): 57.95 kbp from chr1:113,813,811.113,871,759. If you are having problems with GBrowse not displaying your tracks correctly, please try deleting your browser cookies. Click here for instructions. For your browser of choice. Download Decorated FASTA File. Download Protein Sequence File. Show 57.95 kbp. IChip/GWAS association summary statistics are available after acceptance of our data access agreement ( login required. Immunobase Core Disease Regions.

2

ImmunoBase - Primary Sclerosing Cholangitis Disease Overview

http://www.immunobase.org/page/Overview/display/disease/PSC

28th June 2016: In September 2016 ImmunoBase will change. To see how and to leave feedback, please visit beta.immunobase.org. Further information on the regions shown in this table is available from here. From Compare Disease Top. Loading Data.Will take few seconds. Studies containing regions of association for this disease are shown below. Immunochip:Fine Mapping:PSC:Liu JZ:Nat Genet:2013:23603763. Comment on this Page. Printed on Sat August 27, 2016.

3

ImmunoBase - Alopecia Areata Disease Overview

http://www.immunobase.org/page/Overview/display/disease/AA

28th June 2016: In September 2016 ImmunoBase will change. To see how and to leave feedback, please visit beta.immunobase.org. Further information on the regions shown in this table is available from here. From Compare Disease Top. Loading Data.Will take few seconds. Studies containing regions of association for this disease are shown below. Whole Genome Association Study:Alopecia:Petukhova L:Nature:2010:20596022. Meta-analysis:AA:Betz RC :Nat Commun:2015:25608926. Comment on this Page.

4

Index of /downloads

http://www.immunobase.org/downloads

Disease.summary.stats.README.

5

ImmunoBase - Compare Immune Tissue Expression

http://www.immunobase.org/page/HaemAtlasHome

28th June 2016: In September 2016 ImmunoBase will change. To see how and to leave feedback, please visit beta.immunobase.org. Compare Immune Tissue Expression Home. About Compare Immune Tissue Expression Tool. This tool displays gene expression profiles observed in the human haematopoietic system. The dataset was generated by Watkins et al. 1] from purified precursors of erythrocytes and platelets, as well as members of the lymphoid and myeloid lineages. And quantile normalised using the R package "beada...

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chicp.org chicp.org

CHiCP Documentation

https://www.chicp.org/chicp/docs/about

How to Run Your Own CHiCP. Promoter Capture Hi-C Datasets. CHiCP is a web application for visually integrating human population genetic data with promoter capture Hi-C data. It was primarily developed to support the analysis described in Javierre et al (2016) Cell. We incorporate autoimmune focused population genetic data (GWAS and ImmunoChip) from ImmunoBase. CHiCP ( https:/ www.chicp.org. Is currently maintained and developed by Olly Burren. In the Wallace Group. Within the Department of Medicine.

t1dbase.org t1dbase.org

T1DBase - Home Page

http://www.t1dbase.org/cgi-bin/dispatcher.cgi/Welcome/display

28th June 2016: In September 2016 T1DBase will be merged with it's sister site ImmunoBase. Take a sneak peak by visiting beta.immunobase.org. Beta Cell Gene Atlas. 28th June 2016: In September 2016 T1DBase will be merged with it's sister site ImmunoBase. Take a sneak peak by visiting beta.immunobase.org. Immunochip content and QC information is now available. For this custom genotype platform targeting human autoimmune disease. A curated table of Human T1D susceptibility regions is available here.

t1dbase.org t1dbase.org

T1DBase - A Bioinformatics Resource for Type 1 Diabetes Researchers

http://www.t1dbase.org/page/SubmitHelp

28th June 2016: In September 2016 T1DBase will be merged with it's sister site ImmunoBase. Take a sneak peak by visiting beta.immunobase.org. Beta Cell Gene Atlas. How to Submit Data. This resource will be as useful to the community as the data available in it, so your assistance in helping us build this resource is greatly appreciated! Become a T1DBase Curator! If you have data you'd like to submit, or if you would like to ask for more details about how it might happen, contact us. Comment on this Page.

t1dbase.org t1dbase.org

T1DBase - A Bioinformatics Resource for Type 1 Diabetes Researchers

http://www.t1dbase.org/page/Regions/display/species/human

28th June 2016: In September 2016 T1DBase will be merged with it's sister site ImmunoBase. Take a sneak peak by visiting beta.immunobase.org. Beta Cell Gene Atlas. Human Type 1 Diabetes Loci. The first column of each region is coloured accordingly; those which have reached genome-wide association in a T1D study (p 5E-08) or have significant association in candidate gene study,. And those where there is evidence of pleiotropy with another curated autoimmune disease (p.T1D 1E-05 and p.other 5E-08). 08 of t...

t1dbase.org t1dbase.org

T1DBase - A Bioinformatics Resource for Type 1 Diabetes Researchers

http://www.t1dbase.org/page/Regions/display/species/human/disease/1/type/assoc

28th June 2016: In September 2016 T1DBase will be merged with it's sister site ImmunoBase. Take a sneak peak by visiting beta.immunobase.org. Beta Cell Gene Atlas. Human Type 1 Diabetes Loci. The first column of each region is coloured accordingly; those which have reached genome-wide association in a T1D study (p 5E-08) or have significant association in candidate gene study,. And those where there is evidence of pleiotropy with another curated autoimmune disease (p.T1D 1E-05 and p.other 5E-08). 08 of t...

t1dbase.org t1dbase.org

T1DBase - A Bioinformatics Resource for Type 1 Diabetes Researchers

http://www.t1dbase.org/page/FAQ

28th June 2016: In September 2016 T1DBase will be merged with it's sister site ImmunoBase. Take a sneak peak by visiting beta.immunobase.org. Beta Cell Gene Atlas. T1DBase Frequently Asked Questions. The questions in the T1DBase FAQ are organized into categories which match the links in the right navigation bar. How do I search for a gene, genetic marker, or candidate region? What are gene pages? How do I create a T1DBase account? How do I access T1DGC data? What browsers are supported? Enter the identif...

t1dbase.org t1dbase.org

T1DBase - Beta Cell Gene Atlas Home

http://www.t1dbase.org/page/AtlasHome

28th June 2016: In September 2016 T1DBase will be merged with it's sister site ImmunoBase. Take a sneak peak by visiting beta.immunobase.org. Beta Cell Gene Atlas. Beta Cell Gene Atlas Home. About Beta Cell Gene Atlas Tool. This tool contains data on basal. If you use the Atlas or any underlying expression datasets for your research, please cite the following reference: Kutlu, B. et al. 2009) Detailed transcriptome atlas of the pancreatic beta cell. BMC Medical Genomics. PubMed ID: 19146692. The results ...

t1dbase.org t1dbase.org

T1DBase - Compare Immune Tissue Expression

http://www.t1dbase.org/page/HaemAtlasHome

28th June 2016: In September 2016 T1DBase will be merged with it's sister site ImmunoBase. Take a sneak peak by visiting beta.immunobase.org. Beta Cell Gene Atlas. Compare Immune Tissue Expression Home. About Compare Immune Tissue Expression Tool. This tool displays gene expression profiles observed in the human haematopoietic system. The dataset was generated by Watkins et al. 1] from purified precursors of erythrocytes and platelets, as well as members of the lymphoid and myeloid lineages. And quantile...

t1dbase.org t1dbase.org

T1DBase - Regions Summary

http://www.t1dbase.org/page/RegionsLanding/display

28th June 2016: In September 2016 T1DBase will be merged with it's sister site ImmunoBase. Take a sneak peak by visiting beta.immunobase.org. Beta Cell Gene Atlas. T1D susceptibility regions identified through association studies. T1D regions identified through orthology to human T1D susceptibility regions. T1D susceptibility regions identified through linkage/congenic studies. T1D regions identified through orthology to human T1D susceptibility regions. T1D regions associated with a T1D relevant QTL.

t1dbase.org t1dbase.org

T1DBase - A Bioinformatics Resource for Type 1 Diabetes Researchers

http://www.t1dbase.org/page/WebsiteTutorial

28th June 2016: In September 2016 T1DBase will be merged with it's sister site ImmunoBase. Take a sneak peak by visiting beta.immunobase.org. Beta Cell Gene Atlas. The purpose of this tutorial/document is to demonstrate what data and tools are available within T1DBase and how to use these resources efficiently in the context of your research. The tutorial has three parts:. How to use T1DBase. If you want answers to a particular question please check the FAQ. Or drop us a line( Contact Us.

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immunobase.org immunobase.org

ImmunoBase - Home Page

Is a web based resource focused on the genetics and genomics of immunologically related human diseases. Our mission is to provide a curated and integrated set of datasets and tools, across multiple diseases, to support and promote research in this area. ( More. ImmunoBase is a collaboration:. Comment on this Page. Printed on Mon August 10, 2015.

immunobeat.blogspot.com immunobeat.blogspot.com

Stanford Immunology Program Journal Club

Stanford Immunology Program Journal Club. Online home of the journal club. About the journal club. View my complete profile. Immunobeat Newsletter (future home). Monday, June 15, 2009. Wednesday, June 17, 2009. This week's journal club presentation will be given by Serge Emaleu (Herzenberg lab). Serge will be discussing "HIV Research in Africa". We will be in MSOB X303, 12:00-1:00pm (Wed. June 17th). Wednesday, June 10, 2009. Nature Immunology 10, 603 - 609 (2009). Tuesday, May 12, 2009. Darren Bates, Fe...

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Brain Health

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ImmunoBiochem Corporation

ImmunoBiochem is developing antibody-drug conjugates (ADCs) targeted at novel tumor antigens that are augmented in cancer cell secretomes and accumulate in the tumor microenvironment. ImmunoBiochem pipeline consists of ADCs for oncology aiming to solve the problem of tumor heterogeneity. The lead candidates, IMB-202 and IMB-212, are in development for a number of solid malignancies. ImmunoBiochem Corporation is committed to developing novel, targeted biological therapeutics for oncology. ImmunoBiochem en...

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ImmunoBiochem Corporation

ImmunoBiochem is developing antibody-drug conjugates (ADCs) targeted at novel tumor antigens that are augmented in cancer cell secretomes and accumulate in the tumor microenvironment. ImmunoBiochem pipeline consists of ADCs for oncology aiming to solve the problem of tumor heterogeneity. The lead candidates, IMB-202 and IMB-212, are in development for a number of solid malignancies. ImmunoBiochem Corporation is committed to developing novel, targeted biological therapeutics for oncology. ImmunoBiochem en...