INB.BSC.ES

National Institute of Bioinformatics - Computational Bioinformatics Node - Barcelona Supercomputing Centre

National Institute of Bioinformatics - Computational Bioinformatics Node - Barcelona Supercomputing Centre. Web portals to INB-BSC services. Web Service generation tool. XML Schema generation from OWL. Sequence Visualization Tool (Pitch Eye). Database Object Browser (Moby Miner). A Lightweight Perl API to use BioMOBY services. Download tarball: MobyLite.tar.gz. Contains dataTypes ontology and services from main INB repository):. Download tarball: MobyLite Inab.tar.gz. BioMoby Lightweight Java API.

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National Institute of Bioinformatics - Computational Bioinformatics Node - Barcelona Supercomputing Centre | inb.bsc.es Reviews

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National Institute of Bioinformatics - Computational Bioinformatics Node - Barcelona Supercomputing Centre. Web portals to INB-BSC services. Web Service generation tool. XML Schema generation from OWL. Sequence Visualization Tool (Pitch Eye). Database Object Browser (Moby Miner). A Lightweight Perl API to use BioMOBY services. Download tarball: MobyLite.tar.gz. Contains dataTypes ontology and services from main INB repository):. Download tarball: MobyLite Inab.tar.gz. BioMoby Lightweight Java API.

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5 projects

6 presentation

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National Institute of Bioinformatics - Computational Bioinformatics Node - Barcelona Supercomputing Centre | inb.bsc.es Reviews

https://inb.bsc.es

National Institute of Bioinformatics - Computational Bioinformatics Node - Barcelona Supercomputing Centre. Web portals to INB-BSC services. Web Service generation tool. XML Schema generation from OWL. Sequence Visualization Tool (Pitch Eye). Database Object Browser (Moby Miner). A Lightweight Perl API to use BioMOBY services. Download tarball: MobyLite.tar.gz. Contains dataTypes ontology and services from main INB repository):. Download tarball: MobyLite Inab.tar.gz. BioMoby Lightweight Java API.

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inb.bsc.es

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National Institute of Bioinformatics - Computational Bioinformatics Node - Barcelona Supercomputing Centre

http://inb.bsc.es/webservices.php

A list of our Web Services. Document/Literal SOAP-based Web-services for INB-BSC BioMoby services. Workflow examples to execute our Web Services. How to access WebServices. A Perl API to use BioMOBY services. BioMoby Lightweight Java API. JAX-WS based BioMOBY Java API. Internal use Perl API to execute some of the BioMOBY services we offer via ssh connections. MOWServ Web Client to execute BioMOBY WebServices.

2

National Institute of Bioinformatics - Computational Bioinformatics Node - Barcelona Supercomputing Centre

http://inb.bsc.es/resources.php

Our node is integrated in the computational structure of BSC, the following resources are available for INB users. Shared-memory SGI Altix UV100. 96 CPUs Nehalem-EX Intel(R) Xeon(R), 2.67 GHz. 126 nodes (2 Intel Xeon E5649e 6-core at 2,53GHz per node. 24 GB RAM per node. 250 GB local disk storage. 2 NVIDIA M2090 cards. Each containing:. 6GB of GDDR5 Memory. 1 login node and 8 computing nodes. Each:. 2 processors Intel Xeon E5649 6-core at 2,53Ghz. Linux Operating System SLES 11. 4 Power Distrbution Units.

3

National Institute of Bioinformatics - Computational Bioinformatics Node - Barcelona Supercomputing Centre

http://inb.bsc.es/tools.php

Pitch Eye is a java based web tool for aggregation and visualization a sequence relative information. A sequence can be retrieved through available BioMoby services or introduced manually (typed, pasted or dragged). User is offered to execute various BioMoby services from available list. Where possible, results are aligned with original sequence. Moby Miner is a java applet for biological data visualization and retrieval. BioNemus : Web Services generation tool.

4

OWL 2 Schema Generation Tool

http://inb.bsc.es/applications/java/owl2xs/index.html

This is a simple OWL 2. Generation tool. Just click on owl ontology file and it will create a zip file with generated schemas inside. These schema files will keep original URIs in accordance with SAWSDL. Specification and preserve "rdfs:comments" as "xs:documentation" annotations. No Java Support. Please install ( Java 6 plugin.

5

National Institute of Bioinformatics - Computational Bioinformatics Node - Barcelona Supercomputing Centre

http://inb.bsc.es/PerlAPI.php

Please note that the MobyLite API uses the bioMOBY Client libraries. So make sure those libraries work with the repositories you want to use. MobyLite is a Perl API used to call BioMOBY services. It uses the standard biomoby api as an internal engine, but hides most of the protocol to the user. This means that moby datatypes are mapped into perl objects, biomoby services are available as standard perl functions, biomoby exceptions are mapped into perl exceptions, etc. A Perl API to use BioMOBY services.

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inab.org

INB Nodes | INB

http://www.inab.org/about/inb-nodes

Instituto Nacional de Bioinformática. News of the Spanish Bioinformatics Network. List of all projects. The INB is organized as a distributed institute that currently consists of 10 nodes, including a total of 30 staff and internationally renowned scientists, plus a central node that directs and coordinates the activities. Spanish National Cancer Research Centre (CNIO). Coordination of web services through the implementation of standards. Coordination of the development of bioinformatics systems towards ...

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inb.bsc.es

National Institute of Bioinformatics - Computational Bioinformatics Node - Barcelona Supercomputing Centre

National Institute of Bioinformatics - Computational Bioinformatics Node - Barcelona Supercomputing Centre. Web portals to INB-BSC services. Web Service generation tool. XML Schema generation from OWL. Sequence Visualization Tool (Pitch Eye). Database Object Browser (Moby Miner). A Lightweight Perl API to use BioMOBY services. Download tarball: MobyLite.tar.gz. Contains dataTypes ontology and services from main INB repository):. Download tarball: MobyLite Inab.tar.gz. BioMoby Lightweight Java API.

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