INSIGNIA.CBCB.UMD.EDU

Insignia

Insignia is a project to create and store information about a broad range of microbial pathogens, focusing primarily on bacteria and viruses. Click on Run Insignia. To perform a search, or check the Examples Page. To see a short walkthrough of the system. There are two major components to the system:. A computational pipeline to generate unique DNA signatures for any and all pathogens in our database. For citation, more information, or validation results. Please see our publications:. 2007 May 18;3(5):e98.

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Insignia is a project to create and store information about a broad range of microbial pathogens, focusing primarily on bacteria and viruses. Click on Run Insignia. To perform a search, or check the Examples Page. To see a short walkthrough of the system. There are two major components to the system:. A computational pipeline to generate unique DNA signatures for any and all pathogens in our database. For citation, more information, or validation results. Please see our publications:. 2007 May 18;3(5):e98.

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Insignia | insignia.cbcb.umd.edu Reviews

https://insignia.cbcb.umd.edu

Insignia is a project to create and store information about a broad range of microbial pathogens, focusing primarily on bacteria and viruses. Click on Run Insignia. To perform a search, or check the Examples Page. To see a short walkthrough of the system. There are two major components to the system:. A computational pipeline to generate unique DNA signatures for any and all pathogens in our database. For citation, more information, or validation results. Please see our publications:. 2007 May 18;3(5):e98.

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insignia.cbcb.umd.edu

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Insignia

http://insignia.cbcb.umd.edu/validated.php

Below are validation reports for assays designed from Insignia signatures. Each report lists the strains used for validation, the primer and probe sequences used for each assay, and the validation results. Assays were often designed using fewer genomes than are currently available. We recommend that any signatures listed in these reports be computationally revalidated using the latest vesion of the Insignia database. TaqMan validation results are given for 50. 2007 May 18;3(5):e98. Specific assays, 10.

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Insignia

http://insignia.cbcb.umd.edu/examples.php

This page walks the user through a simple example with. And explains how to interpret the results. At the bottom of this page are some pre-formed queries for select pathogens. The Insignia pipeline can be run by clicking the " Run Insignia. To compute signatures that are specific to all strains of. Begin by selecting a reference Vibrio. A good choice is. Vibrio cholerae El Tor N16961. Click here to run the query described above. 20 2 signature words,completely covering the interval [. In the reference se...

3

Insignia

http://insignia.cbcb.umd.edu/help.php

See the Examples Page. For a walkthough, and a selection of pre-made queries for some major pathogens. The result of the search will be a list of signature chains and the corresponding DNA sequence from the reference genome. A signature chain is a set of consecutive k-mer signature words. Intervals are given as the start of the first signature word and the end of the last signature word in the chain. Thus, the interval [. K 2 signature words,completely covering the interval [. Zoom In to Nucelitude Level.

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Gemina MySQL Stats

http://insignia.cbcb.umd.edu/mysqlstats.php

Total database size (including indices). K-unique signatures (partition 1). K-unique signatures (partition 2). K-unique signatures (partition 3). K-unique signatures (partition 4). K-unique signatures (partition 5). K-unique signatures (partition 6). K-unique signatures (partition 7). K-unique signatures (partition 8). K-unique signatures (partition 9). UDP-glucose- hexose-1-phosphate uridylyltransferase.s. Mannose-1-phosphate guanylyltransferase (GDP).s. Plastoquinol- plastocyanin reductase.s. 2,6-dioxo...

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Insignia

http://insignia.cbcb.umd.edu/query.php

August 27, 2016, 5:47 am. Organisms in Insignia ( 11274. Viruses/phages , 2653. Click to select, ctrl click to unselect or multi-select, shift click to range-select. The numbers in parentheses indicate the number of assembly contigs for each organism. Organisms with greater than (≥). Select one genome to act as a reference coordinate system. Optionally select additional genomes to target. All signatures returned for the reference genome will be shared by these genomes. Abaca bunchy top virus (6). Acidian...

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The ELPH Home Page

http://www.cbcb.umd.edu/software/ELPH

Center for Bioinformatics and Computational Biology. Genome Assembly ». Gene Finding ». Motif and Site Prediction. Genome Sequencing ». Production Assemblies ». CMSC858L: Network Algorithms for Biology. CMSC423: Bioinformatic Algorithms, Databases, and Tools. CMSC 858E: Bioinformatics for Metagenomics. Workshop on Molecular Evolution. Workshop on Comparative Genomics. College of Chemical and Life Sciences. College of Computer, Mathematical and Physical Sciences. Institute for Advanced Computer Studies.

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insignia.cbcb.umd.edu

Insignia

Insignia is a project to create and store information about a broad range of microbial pathogens, focusing primarily on bacteria and viruses. Click on Run Insignia. To perform a search, or check the Examples Page. To see a short walkthrough of the system. There are two major components to the system:. A computational pipeline to generate unique DNA signatures for any and all pathogens in our database. For citation, more information, or validation results. Please see our publications:. 2007 May 18;3(5):e98.

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Insignia Group of Companies

INSIGNIA GROUP OF COMPANIES. Insignia Group of Companies is the world’s leading luxury financial and lifestyle management organisation. Membership is by invitation only. The world’s most desirable premium payment cards. The ultimate wish granters. IGC is a brand designed to represent all that is best in today’s luxury goods and services market, and provide a premier lifestyle service to an exclusive group of ultra-high net worth individuals. Insignia Group of Companies. 55 Bryanston Street,. We are alway...

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Insignia – Food & Feed Consultancy

Mobile. 254 716 399 717, 254 716 399 718. Food & Feed Production Services. Food/Feed Preservation and Safety. Quality Management System – ISO 9001. Environmental Management System – ISO 14000. Laboratory Managrment Systems – ISO 17025. Occupational Health and Safety Management Systems (OHSAS) – ISO 18001. Food Safety Management Systems – ISO 22000. Hazard Analysis & Critical Control Points (HACCP). Product Development & Research. New Product Development & Innovation. Research & Technology. See How We Help.