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Berkeley Drosophila Genome Projectdescription
http://insitu.fruitfly.org/
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Berkeley Drosophila Genome Project | insitu.fruitfly.org Reviews
https://insitu.fruitfly.org
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insitu.fruitfly.org
Berkeley Drosophila Genome Project
http://insitu.fruitfly.org/insitu/html/about_us.html
Berkeley Drosophila Genome Project, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley CA. Use the form below to search our in situ database. Alternate ways to search our database either by submitting a newline-delimited list of genes, or by browsing a controlled vocabulary used to annotate in situ expression patterns. 2016 Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project
http://insitu.fruitfly.org/insitu/html/faq.html
Why is there a new site? How often are new data released? How does the image similarity search work? This is custom image analysis software that uses representations of the expression patterns in virtual embryos generated with a deformable, triangular mesh grid. A full description of the method and related analysis tools are described in Frise et al., 2010. We are developing web versions of more of these image analysis tools and hope to add these as new features on this site in coming months. Tracheal st...
Berkeley Drosophila Genome Project
http://insitu.fruitfly.org/insitu/html/microarrays.html
Microarray analysis of embryogenesis time-course. To provide an independent measurement that will validate the results of each RNA insitu experiment we analyzed the relevant portion of Drosophila embryogenesis using Affymetrix Gene Chip technology. Gene Chips were chosen over spotted cDNA array because the probes that interrogate gene expression on Affymeytix arrays are designed computationally and have no physical link to the probes used to determine the insitu patterns.
Berkeley Drosophila Genome Project
http://insitu.fruitfly.org/insitu/html/annotation.html
We developed a controlled vocabulary to annotate gene expression patterns during embryogenesis in collaboration with Volker Hartnestein and Michael Ashburner. The basic concept of annotating gene expression patterns during developmental process is the requirement for a unique term for an embryonic structure at each stage of development. In the context of. Loosely translated as anlage in the process of being formed) that is defined as a morphologically indistinct group of cells at cellular blastoderm that...
Berkeley Drosophila Genome Project
http://insitu.fruitfly.org/insitu/html/imaging.html
Gene expression patterns are documented by taking digital photographs of stained embryos mounted on a slide and examined under microscope. We take two types of digital images. Image staging and grouping. On public web reports images are organized vertically and development of the pattern can be followed by scrolling up and down. Use the form below to search our in situ database. 2016 Berkeley Drosophila Genome Project.
TOTAL PAGES IN THIS WEBSITE
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Geisha
http://geisha.arizona.edu/geisha/links.jsp?category=5
Gene name or description. Human Disease Gene Search. Gene Expression Databases Links:. Gene Expression in Ascidians. Multi organism information system. Drosphila Gene Expression Patterns. Mouse Gene Expression Database. Mouse Digital Atlas of Gene Expression. XenBase (Xenopus) Gene Expression Page. ZFIN Gene Expression Page. 2008 Arizona Board of Regents. This website is hosted by the Biotechnology Computing Facility at the University of Arizona.
Useful Links | ashelab
https://ashelab.com/home/useful-links
The Hilary Ashe lab website, University of Manchester, UK. Faculty of Life Sciences, University of Manchester: http:/ www.ls.manchester.ac.uk. Pubmed: http:/ www.ncbi.nlm.nih.gov/sites/entrez? National Center for Biotechnology Information: http:/ www.ncbi.nlm.nih.gov. UCSC Genome Browser: http:/ genome.ucsc.edu/index.html. ModENCODE: http:/ www.modencode.org. Flybase: http:/ flybase.org. Flymine: http:/ www.flymine.org/. The Interactive Fly: http:/ www.sdbonline.org/fly/aimain/1aahome.htm.
Useful Links | ashelab
https://ashelab.com/useful-links
The Hilary Ashe lab website, University of Manchester, UK. Faculty of Life Sciences, University of Manchester: http:/ www.ls.manchester.ac.uk. Pubmed: http:/ www.ncbi.nlm.nih.gov/sites/entrez? National Center for Biotechnology Information: http:/ www.ncbi.nlm.nih.gov. UCSC Genome Browser: http:/ genome.ucsc.edu/index.html. ModENCODE: http:/ www.modencode.org. Flybase: http:/ flybase.org. Flymine: http:/ www.flymine.org/. The Interactive Fly: http:/ www.sdbonline.org/fly/aimain/1aahome.htm.
BDGP: Home
http://www.bdgp.org/index.html
Berkeley Drosophila Genome Project. August 12, 2015: Lessons from modENCODE. Brown JB, Celniker SE. Annu Rev Genomics Hum Genet. 2015 Jun 26. July 28, 2014: RELEASE 6. Genome sequence has been released! June 2014 The modENCODE Consortium. We have published a series of papers on functional annotation of the. Genome. See our contributions here. February 1, 2010: We have redesigned the embryonic expression patterns website. Will remain available. See FAQ. For details on the changes. About BDGP: . Through i...
BDGP: Home
http://www.fruitfly.org/index.html
Berkeley Drosophila Genome Project. August 12, 2015: Lessons from modENCODE. Brown JB, Celniker SE. Annu Rev Genomics Hum Genet. 2015 Jun 26. July 28, 2014: RELEASE 6. Genome sequence has been released! June 2014 The modENCODE Consortium. We have published a series of papers on functional annotation of the. Genome. See our contributions here. February 1, 2010: We have redesigned the embryonic expression patterns website. Will remain available. See FAQ. For details on the changes. About BDGP: . Through i...
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Submit a Feature Project. Program in Socially Engaged Design. Program in Global Health Design. Program in Sustainable Engineering. Master’s of Design Science – Socially Engaged Tracks. Center for Socially Engaged Design. Our consulting service, design academy, education programs, and opportunities to advance socially engaged design are currently available for use by University of Michigan students, student organizations, and faculty. Strengthen your knowledge and skills. Let us guide you. The Center for ...
Berkeley Drosophila Genome Project
Patterns of gene expression in. We use high throughput 96-well plate RNA. To determine patterns of gene expression during embryogenesis for. Genes represented in non-redundant sets of. ESTs, the DGC collections. And the Drosophila Gold Collection. At the end of production pipeline. Gene expression patterns are documented by taking a large number of digital images. Of individual embryos. The quality and identity of the captured image data are verified by independently derived microarray time-course.
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