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INTERNAL PAGES

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1

Joe Wandy: May 2014

http://www.joewandy.com/2014_05_01_archive.html

Bioinformatics research, computer science concepts and other essays. Posted by Joe Wandy. On Saturday, May 24, 2014. Hierarchical Dirichlet process (HDP) clustering is a non-parametric Bayesian method for clustering data while sharing those clusters across groups. Dirichlet process mixture model itself is commonly used in Bayesian non-parametric clustering of data which allow us to avoid having to specify the number of clusters a priori. The DP mixture model are explained in more details here. Has lots o...

2

Joe Wandy: February 2015

http://www.joewandy.com/2015_02_01_archive.html

Bioinformatics research, computer science concepts and other essays. HDP-Align: Hierarchical Dirichlet Process Clustering for Multiple Peak Alignment of LC-MS Data. Posted by Joe Wandy. On Friday, February 20, 2015. The paper " HDP-Align: Hierarchical Dirichlet Process Clustering for Multiple Peak Alignment of LC-MS Data. Our method has been implemented as a stand-alone application in Java, available for download at http:/ github.com/joewandy/HDP-Align. Posted by Joe Wandy. Link to follow shortly!

3

Joe Wandy: February 2013

http://www.joewandy.com/2013_02_01_archive.html

Bioinformatics research, computer science concepts and other essays. Posted by Joe Wandy. On Monday, February 4, 2013. I retrieved a lot more ’noisy’ database entries from the massive online chemical database Pubchem. With Ronan’s new identification algorithm on hand, this allowed me to run experiments to compare the behaviour of mzMatch’s identification code versus our clustering-based one (figure 1↓. 1) ROC curve is wrong, vary the threshold, not the DB size. 12 The Long Story. 8197;= ( m. After exclud...

4

Joe Wandy: April 2015

http://www.joewandy.com/2015_04_01_archive.html

Bioinformatics research, computer science concepts and other essays. Posted by Joe Wandy. On Saturday, April 11, 2015. A lot of basic stuff seems to be missing / under-developed for natural language processing in the Indonesian language? Following are some links that I found and might be useful:. My fork of Peb Ruswono Aryan's github repo. Containing his implementation of a HMM-based POS tagger ( originally decribed in this paper. Links to a whole bunch of training corpuses. Posted by Joe Wandy. In the p...

5

Joe Wandy: October 2011

http://www.joewandy.com/2011_10_01_archive.html

Bioinformatics research, computer science concepts and other essays. All I know about . protein. Posted by Joe Wandy. On Wednesday, October 19, 2011. Can be summarized in a little post here. Protein and Its Structure. Is a polymer of amino acids which are joined together by the peptide bonds. Table 1. The twenty amino acids encoded by the DNA (Alberts, et al. In particular, combinations of two domains are common and they can occur in roughly twenty five percents of all known proteins across all living be...

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